Analysis of interatomic Contacts of Structural Units in PDB entry:
9DDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DDD entry

There are 8 chains in PDB entry 9DDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9HIS 232
A
 MET 234HIS 372
A
 ALA 374PHE 414
B
 LEU 8HIS 232
B
 MET 234HIS 372
B
 ALA 374GLY 415
C
 LEU 3PHE 150
D
 LEU 5PHE 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9DDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed alpha
Helix 2
AA2
A
16 22Right-handed 310
Helix 3
AA3
A
42 56Right-handed alpha
Helix 4
AA4
A
65 87Right-handed alpha
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
98 110Right-handed alpha
Helix 7
AA7
A
132 135Right-handed 310
Helix 8
AA8
A
136 147Right-handed alpha
Helix 9
AA9
A
189 199Right-handed alpha
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
232 234Right-handed 310
Helix 12
AB3
A
246 253Right-handed alpha
Helix 13
AB4
A
277 281Right-handed 310
Helix 14
AB5
A
286 304Right-handed alpha
Helix 15
AB6
A
304 325Right-handed alpha
Helix 16
AB7
A
352 363Right-handed alpha
Helix 17
AB8
A
374 381Right-handed alpha
Helix 18
AB9
A
396 414Right-handed alpha
Helix 19
AC1
B
9 15Right-handed alpha
Helix 20
AC2
B
16 22Right-handed 310
Helix 21
AC3
B
42 54Right-handed alpha
Helix 22
AC4
B
65 87Right-handed alpha
Helix 23
AC5
B
89 91Right-handed 310
Helix 24
AC6
B
98 110Right-handed alpha
Helix 25
AC7
B
132 135Right-handed 310
Helix 26
AC8
B
136 147Right-handed alpha
Helix 27
AC9
B
189 200Right-handed alpha
Helix 28
AD1
B
218 223Right-handed alpha
Helix 29
AD2
B
232 234Right-handed 310
Helix 30
AD3
B
246 253Right-handed alpha
Helix 31
AD4
B
277 281Right-handed 310
Helix 32
AD5
B
286 304Right-handed alpha
Helix 33
AD6
B
304 325Right-handed alpha
Helix 34
AD7
B
352 363Right-handed alpha
Helix 35
AD8
B
374 381Right-handed alpha
Helix 36
AD9
B
396 415Right-handed alpha
Helix 37
AE1
C
4 9Right-handed alpha
Helix 38
AE2
C
10 19Right-handed alpha
Helix 39
AE3
C
67 82Right-handed alpha
Helix 40
AE4
C
85 101Right-handed alpha
Helix 41
AE5
C
109 114Right-handed alpha
Helix 42
AE6
C
115 124Right-handed 310
Helix 43
AE7
C
125 150Right-handed alpha
Helix 44
AE8
D
10 19Right-handed alpha
Helix 45
AE9
D
67 82Right-handed alpha
Helix 46
AF1
D
85 101Right-handed alpha
Helix 47
AF2
D
109 114Right-handed alpha
Helix 48
AF3
D
115 124Right-handed 310
Helix 49
AF4
D
125 150Right-handed alpha
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There are 10 sheets in PDB entry 9DDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
365 366parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
226 230anti-parallel
Strand 4
A
203 207parallel
Strand 5
A
172 178parallel
Strand 6
A
124 128parallel
Strand 7
A
149 153parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
271 273anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
386 389anti-parallel
Strand 4
A
368 370anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
365 366parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
241 245anti-parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
203 207parallel
Strand 5
B
172 178parallel
Strand 6
B
124 128parallel
Strand 7
B
149 153parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
271 273anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 332first strand
Strand 2
B
344 348anti-parallel
Strand 3
B
386 389anti-parallel
Strand 4
B
368 370anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 35first strand
Strand 2
C
44 50anti-parallel
Strand 3
C
57 63anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 35first strand
Strand 2
D
44 50anti-parallel
Strand 3
D
57 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il