Analysis of interatomic Contacts of Structural Units in PDB entry:
9DDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DDO entry

There are 8 chains in PDB entry 9DDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9ALA 232
B
 MET 6ALA 232
C
 ASP 9ALA 232
D
 ASP 9HIS 233
E
 THR 8HIS 233
F
 PRO 10VAL 32
Y
 ASP 11THR 42
Z
 ASN 12PRO 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9DDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
20 63Right-handed alpha
Helix 3
AA3
A
67 76Right-handed alpha
Helix 4
AA4
A
82 98Right-handed alpha
Helix 5
AA5
A
103 127Right-handed alpha
Helix 6
AA6
A
129 162Right-handed alpha
Helix 7
AA7
A
166 230Right-handed alpha
Helix 8
AA8
B
11 18Right-handed alpha
Helix 9
AA9
B
20 63Right-handed alpha
Helix 10
AB1
B
67 76Right-handed alpha
Helix 11
AB2
B
82 97Right-handed alpha
Helix 12
AB3
B
103 127Right-handed alpha
Helix 13
AB4
B
129 163Right-handed alpha
Helix 14
AB5
B
166 232Right-handed alpha
Helix 15
AB6
C
11 18Right-handed alpha
Helix 16
AB7
C
20 63Right-handed alpha
Helix 17
AB8
C
67 75Right-handed alpha
Helix 18
AB9
C
76 78Right-handed 310
Helix 19
AC1
C
82 98Right-handed alpha
Helix 20
AC2
C
103 127Right-handed alpha
Helix 21
AC3
C
129 163Right-handed alpha
Helix 22
AC4
C
166 232Right-handed alpha
Helix 23
AC5
D
11 18Right-handed alpha
Helix 24
AC6
D
20 63Right-handed alpha
Helix 25
AC7
D
67 76Right-handed alpha
Helix 26
AC8
D
82 98Right-handed alpha
Helix 27
AC9
D
103 127Right-handed alpha
Helix 28
AD1
D
129 163Right-handed alpha
Helix 29
AD2
D
170 231Right-handed alpha
Helix 30
AD3
E
11 19Right-handed alpha
Helix 31
AD4
E
20 63Right-handed alpha
Helix 32
AD5
E
67 76Right-handed alpha
Helix 33
AD6
E
82 97Right-handed alpha
Helix 34
AD7
E
103 127Right-handed alpha
Helix 35
AD8
E
129 163Right-handed alpha
Helix 36
AD9
E
166 169Right-handed 310
Helix 37
AE1
E
170 233Right-handed alpha
Helix 38
AE2
F
11 32Right-handed alpha
Helix 39
AE3
Y
20 38Right-handed alpha
Helix 40
AE4
Y
39 41Right-handed 310
Helix 41
AE5
Z
21 37Right-handed alpha
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There are no sheets in PDB entry 9DDO
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