Analysis of interatomic Contacts of Structural Units in PDB entry:
9DEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DEN entry

There are 10 chains in PDB entry 9DEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 210GLN 553
A
 LYS 209GLN 553
D
 PHE 1PHE 1
D
 ASN 3ASN 3
D
 PRO 5ASN 6
D
 TYR 8LYS 13
C
 PHE 1PHE 1
C
 ASN 3ASN 3
C
 PRO 5ASN 6
C
 TYR 8LYS 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9DEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
224 234Right-handed alpha
Helix 2
AA2
B
235 244Right-handed alpha
Helix 3
AA3
B
255 270Right-handed alpha
Helix 4
AA4
B
276 283Right-handed alpha
Helix 5
AA5
B
289 294Right-handed alpha
Helix 6
AA6
B
295 311Right-handed alpha
Helix 7
AA7
B
318 325Right-handed alpha
Helix 8
AA8
B
359 369Right-handed alpha
Helix 9
AA9
B
382 384Right-handed 310
Helix 10
AB1
B
434 437Right-handed 310
Helix 11
AB2
B
489 494Right-handed alpha
Helix 12
AB3
B
495 498Right-handed 310
Helix 13
AB4
B
523 528Right-handed alpha
Helix 14
AB5
B
532 536Right-handed 310
Helix 15
AB6
B
537 553Right-handed alpha
Helix 16
AB7
A
224 234Right-handed alpha
Helix 17
AB8
A
235 244Right-handed alpha
Helix 18
AB9
A
255 270Right-handed alpha
Helix 19
AC1
A
276 283Right-handed alpha
Helix 20
AC2
A
289 294Right-handed alpha
Helix 21
AC3
A
295 312Right-handed alpha
Helix 22
AC4
A
318 325Right-handed alpha
Helix 23
AC5
A
359 369Right-handed alpha
Helix 24
AC6
A
381 385Right-handed 310
Helix 25
AC7
A
434 437Right-handed 310
Helix 26
AC8
A
489 494Right-handed alpha
Helix 27
AC9
A
495 498Right-handed 310
Helix 28
AD1
A
523 528Right-handed alpha
Helix 29
AD2
A
532 536Right-handed 310
Helix 30
AD3
A
537 552Right-handed alpha
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There are 8 sheets in PDB entry 9DEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 347first strand
Strand 2
B
326 334anti-parallel
Strand 3
B
389 395anti-parallel
Strand 4
B
371 373anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
401 407parallel
Strand 3
B
510 520anti-parallel
Strand 4
B
447 458anti-parallel
Strand 5
B
430 432anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
401 407parallel
Strand 3
B
510 520anti-parallel
Strand 4
B
447 458anti-parallel
Strand 5
B
464 469anti-parallel
Strand 6
B
478 481anti-parallel
Strand 7
B
484 487anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 380first strand
Strand 2
B
386 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
419 420anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 347first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
389 395anti-parallel
Strand 4
A
371 372anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
401 407parallel
Strand 3
A
512 520anti-parallel
Strand 4
A
447 457anti-parallel
Strand 5
A
430 432anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
401 407parallel
Strand 3
A
512 520anti-parallel
Strand 4
A
447 457anti-parallel
Strand 5
A
464 469anti-parallel
Strand 6
A
478 481anti-parallel
Strand 7
A
484 487anti-parallel
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