Analysis of interatomic Contacts of Structural Units in PDB entry:
9DEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DEP entry

There are 6 chains in PDB entry 9DEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 210ALA 552
B
 LYS 209GLN 553
C
 PHE 1LYS 14
D
 PHE 1CYS 13
E
 HIS 210GLU 547
F
 PHE 1CYS 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9DEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 234Right-handed alpha
Helix 2
AA2
A
235 244Right-handed alpha
Helix 3
AA3
A
255 270Right-handed alpha
Helix 4
AA4
A
276 283Right-handed alpha
Helix 5
AA5
A
295 311Right-handed alpha
Helix 6
AA6
A
318 325Right-handed alpha
Helix 7
AA7
A
359 369Right-handed alpha
Helix 8
AA8
A
374 378Right-handed 310
Helix 9
AA9
A
382 384Right-handed 310
Helix 10
AB1
A
434 437Right-handed 310
Helix 11
AB2
A
489 494Right-handed alpha
Helix 12
AB3
A
495 498Right-handed 310
Helix 13
AB4
A
523 528Right-handed alpha
Helix 14
AB5
A
532 536Right-handed 310
Helix 15
AB6
A
537 552Right-handed alpha
Helix 16
AB7
B
224 234Right-handed alpha
Helix 17
AB8
B
235 244Right-handed alpha
Helix 18
AB9
B
255 270Right-handed alpha
Helix 19
AC1
B
276 283Right-handed alpha
Helix 20
AC2
B
287 293Right-handed alpha
Helix 21
AC3
B
295 312Right-handed alpha
Helix 22
AC4
B
318 325Right-handed alpha
Helix 23
AC5
B
359 369Right-handed alpha
Helix 24
AC6
B
382 384Right-handed 310
Helix 25
AC7
B
434 437Right-handed 310
Helix 26
AC8
B
489 494Right-handed alpha
Helix 27
AC9
B
495 498Right-handed 310
Helix 28
AD1
B
523 528Right-handed alpha
Helix 29
AD2
B
532 536Right-handed 310
Helix 30
AD3
B
537 552Right-handed alpha
Helix 31
AD4
E
224 234Right-handed alpha
Helix 32
AD5
E
235 244Right-handed alpha
Helix 33
AD6
E
255 270Right-handed alpha
Helix 34
AD7
E
276 281Right-handed alpha
Helix 35
AD8
E
295 311Right-handed alpha
Helix 36
AD9
E
318 325Right-handed alpha
Helix 37
AE1
E
359 369Right-handed alpha
Helix 38
AE2
E
374 378Right-handed 310
Helix 39
AE3
E
382 384Right-handed 310
Helix 40
AE4
E
434 437Right-handed 310
Helix 41
AE5
E
489 495Right-handed alpha
Helix 42
AE6
E
496 498Right-handed 310
Helix 43
AE7
E
523 528Right-handed alpha
Helix 44
AE8
E
537 547Right-handed alpha
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There are 15 sheets in PDB entry 9DEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 347first strand
Strand 2
A
326 334anti-parallel
Strand 3
A
389 397anti-parallel
Strand 4
A
371 373anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
401 407parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 458anti-parallel
Strand 5
A
430 432anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
401 407parallel
Strand 3
A
511 520anti-parallel
Strand 4
A
447 458anti-parallel
Strand 5
A
463 469anti-parallel
Strand 6
A
478 481anti-parallel
Strand 7
A
484 487anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
386 387anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
409 412anti-parallel
Strand 3
C
5 7anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 347first strand
Strand 2
B
326 334anti-parallel
Strand 3
B
389 395anti-parallel
Strand 4
B
371 373anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
401 406parallel
Strand 3
B
511 520anti-parallel
Strand 4
B
447 457anti-parallel
Strand 5
B
430 432anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
401 406parallel
Strand 3
B
511 520anti-parallel
Strand 4
B
447 457anti-parallel
Strand 5
B
464 469anti-parallel
Strand 6
B
478 481anti-parallel
Strand 7
B
484 487anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
379 380first strand
Strand 2
B
386 387anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
409 412anti-parallel
Strand 3
D
5 7anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
340 347first strand
Strand 2
E
326 334anti-parallel
Strand 3
E
389 397anti-parallel
Strand 4
E
371 373anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 353first strand
Strand 2
E
401 407parallel
Strand 3
E
511 520anti-parallel
Strand 4
E
447 457anti-parallel
Strand 5
E
430 432anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
350 353first strand
Strand 2
E
401 407parallel
Strand 3
E
511 520anti-parallel
Strand 4
E
447 457anti-parallel
Strand 5
E
465 469anti-parallel
Strand 6
E
478 481anti-parallel
Strand 7
E
484 487anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
379 380first strand
Strand 2
E
386 387anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
418 420first strand
Strand 2
E
409 411anti-parallel
Strand 3
F
5 7anti-parallel
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