Analysis of interatomic Contacts of Structural Units in PDB entry:
9DES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DES entry

There are 4 chains in PDB entry 9DES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 16PRO 689
Y
 G 1 T 28
B
 ALA 16ARG 684
X
 G 1 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9DES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
49 61Right-handed alpha
Helix 3
AA3
A
76 90Right-handed alpha
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
129 143Right-handed alpha
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
175 179Right-handed 310
Helix 8
AA8
A
186 202Right-handed alpha
Helix 9
AA9
A
208 221Right-handed alpha
Helix 10
AB1
A
227 231Right-handed 310
Helix 11
AB2
A
244 254Right-handed alpha
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
A
286 291Right-handed alpha
Helix 14
AB5
A
292 295Right-handed 310
Helix 15
AB6
A
311 324Right-handed alpha
Helix 16
AB7
A
357 369Right-handed alpha
Helix 17
AB8
A
385 395Right-handed alpha
Helix 18
AB9
A
411 424Right-handed alpha
Helix 19
AC1
A
429 435Right-handed alpha
Helix 20
AC2
A
445 460Right-handed alpha
Helix 21
AC3
A
464 469Right-handed alpha
Helix 22
AC4
A
484 499Right-handed alpha
Helix 23
AC5
A
512 526Right-handed alpha
Helix 24
AC6
A
529 547Right-handed alpha
Helix 25
AC7
A
630 644Right-handed alpha
Helix 26
AC8
A
670 675Right-handed alpha
Helix 27
AC9
B
24 33Right-handed alpha
Helix 28
AD1
B
48 62Right-handed alpha
Helix 29
AD2
B
76 91Right-handed alpha
Helix 30
AD3
B
102 112Right-handed alpha
Helix 31
AD4
B
128 146Right-handed alpha
Helix 32
AD5
B
156 166Right-handed alpha
Helix 33
AD6
B
171 177Right-handed alpha
Helix 34
AD7
B
182 191Right-handed alpha
Helix 35
AD8
B
213 220Right-handed alpha
Helix 36
AD9
B
221 232Right-handed alpha
Helix 37
AE1
B
244 254Right-handed alpha
Helix 38
AE2
B
286 291Right-handed alpha
Helix 39
AE3
B
292 295Right-handed 310
Helix 40
AE4
B
311 322Right-handed alpha
Helix 41
AE5
B
323 325Right-handed 310
Helix 42
AE6
B
351 369Right-handed alpha
Helix 43
AE7
B
389 396Right-handed alpha
Helix 44
AE8
B
414 423Right-handed alpha
Helix 45
AE9
B
429 437Right-handed alpha
Helix 46
AF1
B
439 444Right-handed alpha
Helix 47
AF2
B
449 459Right-handed alpha
Helix 48
AF3
B
469 479Right-handed 310
Helix 49
AF4
B
483 500Right-handed alpha
Helix 50
AF5
B
511 524Right-handed alpha
Helix 51
AF6
B
532 552Right-handed alpha
Helix 52
AF7
B
562 581Right-handed alpha
Helix 53
AF8
B
597 601Right-handed 310
Helix 54
AF9
B
627 644Right-handed alpha
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There are 6 sheets in PDB entry 9DES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
269 271parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
72 74parallel
Strand 3
A
236 237parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
204 205parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
301 302parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
234 236parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
595 596parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il