Analysis of interatomic Contacts of Structural Units in PDB entry:
9DF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DF0 entry

There are 3 chains in PDB entry 9DF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 306THR 417
H
 GLN 3SER 118
L
 SER 2VAL 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9DF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
364 371Right-handed 310
Helix 2
AA2
H
27 31Right-handed 310
Helix 3
AA3
H
88 92Right-handed 310
Helix 4
AA4
L
27 32Right-handed 310
Helix 5
AA5
L
81 85Right-handed 310
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There are 8 sheets in PDB entry 9DF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 328first strand
Strand 2
A
307 317anti-parallel
Strand 3
A
340 350parallel
Strand 4
A
397 416parallel
Strand 5
A
373 380anti-parallel
Strand 6
A
333 335anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 328first strand
Strand 2
A
307 317anti-parallel
Strand 3
A
340 350parallel
Strand 4
A
397 416parallel
Strand 5
A
386 393anti-parallel
Strand 6
A
353 358anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
34 42anti-parallel
Strand 5
H
46 54anti-parallel
Strand 6
H
59 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
112 116parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
104 108anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
106 109parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 50anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
106 109parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
100 102anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
17 23first strand
Strand 2
L
72 78anti-parallel
Strand 3
L
64 69anti-parallel
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