Analysis of interatomic Contacts of Structural Units in PDB entry:
9DF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DF5 entry

There are 2 chains in PDB entry 9DF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLN 172
B
 MET 0GLN 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 9DF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
30 32Right-handed 310
Helix 3
AA3
A
135 139Right-handed 310
Helix 4
AA4
B
2 8Right-handed alpha
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There are 6 sheets in PDB entry 9DF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
24 28anti-parallel
Strand 4
A
55 59anti-parallel
Strand 5
A
48 51anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
150 160parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
82 88anti-parallel
Strand 5
A
94 100anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
150 160parallel
Strand 3
A
166 170anti-parallel
Strand 4
A
113 120anti-parallel
Strand 5
A
104 108anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
15 19anti-parallel
Strand 3
B
24 27anti-parallel
Strand 4
B
56 59anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
150 159parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
83 88anti-parallel
Strand 5
B
94 99anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
150 159parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
118 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il