Analysis of interatomic Contacts of Structural Units in PDB entry:
9DF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DF9 entry

There is 1 chain in PDB entry 9DF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 12GLU 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9DF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
29 44Right-handed alpha
Helix 3
AA3
A
47 50Right-handed 310
Helix 4
AA4
A
51 58Right-handed alpha
Helix 5
AA5
A
72 85Right-handed alpha
Helix 6
AA6
A
87 99Right-handed alpha
Helix 7
AA7
A
100 109Right-handed alpha
Helix 8
AA8
A
123 137Right-handed alpha
Helix 9
AA9
A
143 155Right-handed alpha
Helix 10
AB1
A
158 170Right-handed alpha
Helix 11
AB2
A
178 190Right-handed alpha
Helix 12
AB3
A
193 205Right-handed alpha
Helix 13
AB4
A
206 224Right-handed alpha
Helix 14
AB5
A
243 251Right-handed alpha
Helix 15
AB6
A
285 288Right-handed 310
Helix 16
AB7
A
289 300Right-handed alpha
Helix 17
AB8
A
323 332Right-handed alpha
Helix 18
AB9
A
335 343Right-handed alpha
Helix 19
AC1
A
361 363Right-handed 310
Helix 20
AC2
A
364 376Right-handed alpha
Helix 21
AC3
A
394 406Right-handed alpha
Helix 22
AC4
A
450 454Right-handed 310
Helix 23
AC5
A
485 494Right-handed alpha
Helix 24
AC6
A
552 562Right-handed alpha
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There are 5 sheets in PDB entry 9DF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
429 432parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
255 260anti-parallel
Strand 5
A
387 390anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 279first strand
Strand 2
A
264 271anti-parallel
Strand 3
A
304 313anti-parallel
Strand 4
A
345 355anti-parallel
Strand 5
A
358 359anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 279first strand
Strand 2
A
264 271anti-parallel
Strand 3
A
304 313anti-parallel
Strand 4
A
345 355anti-parallel
Strand 5
A
382 384parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
461 463anti-parallel
Strand 3
A
439 444anti-parallel
Strand 4
A
513 517anti-parallel
Strand 5
A
537 541anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
457 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il