Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DFA entry

There is 1 chain in PDB entry 9DFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 11PHE 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9DFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
44 49Right-handed 310
Helix 4
AA4
A
51 57Right-handed alpha
Helix 5
AA5
A
72 85Right-handed alpha
Helix 6
AA6
A
87 99Right-handed alpha
Helix 7
AA7
A
100 111Right-handed alpha
Helix 8
AA8
A
123 136Right-handed alpha
Helix 9
AA9
A
141 157Right-handed alpha
Helix 10
AB1
A
158 171Right-handed alpha
Helix 11
AB2
A
178 191Right-handed alpha
Helix 12
AB3
A
193 205Right-handed alpha
Helix 13
AB4
A
206 225Right-handed alpha
Helix 14
AB5
A
243 251Right-handed alpha
Helix 15
AB6
A
285 288Right-handed 310
Helix 16
AB7
A
289 300Right-handed alpha
Helix 17
AB8
A
316 318Right-handed 310
Helix 18
AB9
A
323 332Right-handed alpha
Helix 19
AC1
A
335 343Right-handed alpha
Helix 20
AC2
A
364 376Right-handed alpha
Helix 21
AC3
A
392 406Right-handed alpha
Helix 22
AC4
A
450 454Right-handed 310
Helix 23
AC5
A
483 493Right-handed alpha
Helix 24
AC6
A
494 496Right-handed 310
Helix 25
AC7
A
546 550Right-handed 310
Helix 26
AC8
A
552 562Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9DFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
425 432parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
255 260anti-parallel
Strand 5
A
388 390anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
264 271anti-parallel
Strand 3
A
304 314anti-parallel
Strand 4
A
345 355anti-parallel
Strand 5
A
358 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
304 314anti-parallel
Strand 3
A
345 355anti-parallel
Strand 4
A
382 384parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 478first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
513 517anti-parallel
Strand 5
A
537 541anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
445 448anti-parallel
Strand 3
A
505 508anti-parallel
Strand 4
A
498 500anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 523first strand
Strand 2
A
531 534anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il