Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DFI entry

There are 2 chains in PDB entry 9DFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -3PRO 347
B
 LEU -4TYR 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9DFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
29 44Right-handed alpha
Helix 4
AA4
A
45 49Right-handed 310
Helix 5
AA5
A
50 71Right-handed alpha
Helix 6
AA6
A
74 79Right-handed alpha
Helix 7
AA7
A
81 94Right-handed alpha
Helix 8
AA8
A
100 105Right-handed alpha
Helix 9
AA9
A
110 114Right-handed 310
Helix 10
AB1
A
121 146Right-handed alpha
Helix 11
AB2
A
147 150Right-handed 310
Helix 12
AB3
A
154 182Right-handed alpha
Helix 13
AB4
A
183 191Right-handed alpha
Helix 14
AB5
A
192 195Right-handed 310
Helix 15
AB6
A
209 213Right-handed 310
Helix 16
AB7
A
214 223Right-handed alpha
Helix 17
AB8
A
231 241Right-handed alpha
Helix 18
AB9
A
242 244Right-handed 310
Helix 19
AC1
A
245 247Right-handed 310
Helix 20
AC2
A
248 257Right-handed alpha
Helix 21
AC3
A
260 270Right-handed alpha
Helix 22
AC4
A
275 308Right-handed alpha
Helix 23
AC5
A
323 345Right-handed alpha
Helix 24
AC6
B
3 8Right-handed alpha
Helix 25
AC7
B
14 27Right-handed alpha
Helix 26
AC8
B
29 44Right-handed alpha
Helix 27
AC9
B
45 49Right-handed 310
Helix 28
AD1
B
50 71Right-handed alpha
Helix 29
AD2
B
74 79Right-handed alpha
Helix 30
AD3
B
81 94Right-handed alpha
Helix 31
AD4
B
100 105Right-handed alpha
Helix 32
AD5
B
121 146Right-handed alpha
Helix 33
AD6
B
147 150Right-handed 310
Helix 34
AD7
B
154 182Right-handed alpha
Helix 35
AD8
B
183 191Right-handed alpha
Helix 36
AD9
B
192 196Right-handed 310
Helix 37
AE1
B
209 213Right-handed 310
Helix 38
AE2
B
214 223Right-handed alpha
Helix 39
AE3
B
231 241Right-handed alpha
Helix 40
AE4
B
242 244Right-handed 310
Helix 41
AE5
B
245 247Right-handed 310
Helix 42
AE6
B
248 257Right-handed alpha
Helix 43
AE7
B
260 270Right-handed alpha
Helix 44
AE8
B
275 307Right-handed alpha
Helix 45
AE9
B
323 346Right-handed alpha
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There are 2 sheets in PDB entry 9DFI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
203 205anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
203 205anti-parallel
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