Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DFS entry

There are 7 chains in PDB entry 9DFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	THR 5	GLU 72
C	GLY 74	PHE 375
D	VAL 36	ARG 716

There are 88 helices in PDB entry 9DFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	58	Right-handed 310
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	205	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	257	Right-handed alpha
Helix 11	AB2	A	258	260	Right-handed 310
Helix 12	AB3	A	263	267	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	289	295	Right-handed alpha
Helix 15	AB6	A	308	319	Right-handed alpha
Helix 16	AB7	A	334	336	Right-handed 310
Helix 17	AB8	A	337	348	Right-handed alpha
Helix 18	AB9	A	350	355	Right-handed 310
Helix 19	AC1	A	359	366	Right-handed alpha
Helix 20	AC2	A	369	374	Right-handed alpha
Helix 21	AC3	B	55	61	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	97	101	Right-handed 310
Helix 24	AC6	B	112	126	Right-handed alpha
Helix 25	AC7	B	137	146	Right-handed alpha
Helix 26	AC8	B	172	175	Right-handed 310
Helix 27	AC9	B	181	193	Right-handed alpha
Helix 28	AD1	B	194	196	Right-handed 310
Helix 29	AD2	B	202	217	Right-handed alpha
Helix 30	AD3	B	222	233	Right-handed alpha
Helix 31	AD4	B	252	257	Right-handed alpha
Helix 32	AD5	B	258	262	Right-handed 310
Helix 33	AD6	B	263	268	Right-handed 310
Helix 34	AD7	B	273	283	Right-handed alpha
Helix 35	AD8	B	289	295	Right-handed alpha
Helix 36	AD9	B	301	306	Right-handed 310
Helix 37	AE1	B	308	321	Right-handed alpha
Helix 38	AE2	B	337	349	Right-handed alpha
Helix 39	AE3	B	350	356	Right-handed 310
Helix 40	AE4	B	359	366	Right-handed alpha
Helix 41	AE5	B	368	374	Right-handed alpha
Helix 42	AE6	C	56	61	Right-handed alpha
Helix 43	AE7	C	78	92	Right-handed alpha
Helix 44	AE8	C	97	101	Right-handed 310
Helix 45	AE9	C	112	126	Right-handed alpha
Helix 46	AF1	C	137	146	Right-handed alpha
Helix 47	AF2	C	172	175	Right-handed 310
Helix 48	AF3	C	181	193	Right-handed alpha
Helix 49	AF4	C	194	196	Right-handed 310
Helix 50	AF5	C	202	217	Right-handed alpha
Helix 51	AF6	C	222	231	Right-handed alpha
Helix 52	AF7	C	252	257	Right-handed alpha
Helix 53	AF8	C	258	262	Right-handed 310
Helix 54	AF9	C	263	268	Right-handed 310
Helix 55	AG1	C	273	283	Right-handed alpha
Helix 56	AG2	C	289	295	Right-handed alpha
Helix 57	AG3	C	301	306	Right-handed 310
Helix 58	AG4	C	308	321	Right-handed alpha
Helix 59	AG5	C	337	348	Right-handed alpha
Helix 60	AG6	C	359	366	Right-handed alpha
Helix 61	AG7	C	369	374	Right-handed alpha
Helix 62	AG8	D	92	98	Right-handed alpha
Helix 63	AG9	D	101	105	Right-handed 310
Helix 64	AH1	D	109	122	Right-handed alpha
Helix 65	AH2	D	147	154	Right-handed alpha
Helix 66	AH3	D	165	181	Right-handed alpha
Helix 67	AH4	D	195	212	Right-handed alpha
Helix 68	AH5	D	214	232	Right-handed alpha
Helix 69	AH6	D	270	275	Right-handed 310
Helix 70	AH7	D	284	293	Right-handed alpha
Helix 71	AH8	D	297	302	Right-handed alpha
Helix 72	AH9	D	327	340	Right-handed alpha
Helix 73	AI1	D	343	361	Right-handed alpha
Helix 74	AI2	D	381	392	Right-handed alpha
Helix 75	AI3	D	394	403	Right-handed alpha
Helix 76	AI4	D	419	451	Right-handed alpha
Helix 77	AI5	D	480	512	Right-handed alpha
Helix 78	AI6	D	524	532	Right-handed alpha
Helix 79	AI7	D	537	548	Right-handed alpha
Helix 80	AI8	D	552	565	Right-handed alpha
Helix 81	AI9	D	606	615	Right-handed alpha
Helix 82	AJ1	D	618	625	Right-handed alpha
Helix 83	AJ2	D	625	631	Right-handed alpha
Helix 84	AJ3	D	632	635	Right-handed 310
Helix 85	AJ4	D	641	659	Right-handed alpha
Helix 86	AJ5	D	680	691	Right-handed alpha
Helix 87	AJ6	D	693	703	Right-handed alpha
Helix 88	AJ7	D	709	715	Right-handed 310

There are 24 sheets in PDB entry 9DFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	297	300	parallel
Strand 6	B	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	16	18	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	66	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	69	72	anti-parallel
Strand 4	D	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	133	137	anti-parallel
Strand 3	D	661	668	parallel
Strand 4	D	184	190	parallel
Strand 5	D	464	470	parallel
Strand 6	D	246	253	anti-parallel
Strand 7	D	259	267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	242	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	409	first strand
Strand 2	D	412	417	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	571	first strand
Strand 2	D	580	584	anti-parallel
Strand 3	D	589	593	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFS