Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DFU entry

There is 1 chain in PDB entry 9DFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 32GLU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9DFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
88 91Right-handed 310
Helix 3
AA3
A
92 106Right-handed alpha
Helix 4
AA4
A
122 130Right-handed alpha
Helix 5
AA5
A
131 133Right-handed 310
Helix 6
AA6
A
144 152Right-handed alpha
Helix 7
AA7
A
157 172Right-handed alpha
Helix 8
AA8
A
191 199Right-handed alpha
Helix 9
AA9
A
223 228Right-handed 310
Helix 10
AB1
A
230 242Right-handed alpha
Helix 11
AB2
A
251 256Right-handed alpha
Helix 12
AB3
A
279 284Right-handed alpha
Helix 13
AB4
A
284 290Right-handed alpha
Helix 14
AB5
A
295 302Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9DFU.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
202 207parallel
Strand 3
A
175 182parallel
Strand 4
A
135 139parallel
Strand 5
A
111 116parallel
Strand 6
A
81 86parallel
Strand 7
A
36 42parallel
Strand 8
A
261 262parallel
Strand 9
A
268 270anti-parallel
Strand 10
A
275 276anti-parallel
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