Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DFV entry

There are 7 chains in PDB entry 9DFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 72
A	GLY 74	PHE 375
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	ASP 3	GLU 72
C	GLY 74	PHE 375
D	LEU 4	PRO 673

There are 93 helices in PDB entry 9DFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	61	Right-handed alpha
Helix 2	AA2	A	80	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	194	196	Right-handed 310
Helix 9	AA9	A	202	217	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	252	257	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	285	Right-handed alpha
Helix 15	AB6	A	289	296	Right-handed alpha
Helix 16	AB7	A	301	306	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	336	Right-handed 310
Helix 19	AC1	A	337	348	Right-handed alpha
Helix 20	AC2	A	350	355	Right-handed 310
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	368	374	Right-handed alpha
Helix 23	AC5	B	55	61	Right-handed alpha
Helix 24	AC6	B	78	92	Right-handed alpha
Helix 25	AC7	B	97	101	Right-handed 310
Helix 26	AC8	B	112	126	Right-handed alpha
Helix 27	AC9	B	137	146	Right-handed alpha
Helix 28	AD1	B	172	175	Right-handed 310
Helix 29	AD2	B	181	194	Right-handed alpha
Helix 30	AD3	B	195	197	Right-handed 310
Helix 31	AD4	B	202	217	Right-handed alpha
Helix 32	AD5	B	222	233	Right-handed alpha
Helix 33	AD6	B	252	260	Right-handed alpha
Helix 34	AD7	B	261	262	Right-handed 310
Helix 35	AD8	B	263	268	Right-handed 310
Helix 36	AD9	B	273	285	Right-handed alpha
Helix 37	AE1	B	289	296	Right-handed alpha
Helix 38	AE2	B	301	306	Right-handed 310
Helix 39	AE3	B	308	321	Right-handed alpha
Helix 40	AE4	B	337	349	Right-handed alpha
Helix 41	AE5	B	350	355	Right-handed 310
Helix 42	AE6	B	359	366	Right-handed alpha
Helix 43	AE7	B	368	374	Right-handed alpha
Helix 44	AE8	C	55	61	Right-handed alpha
Helix 45	AE9	C	80	92	Right-handed alpha
Helix 46	AF1	C	97	101	Right-handed 310
Helix 47	AF2	C	112	126	Right-handed alpha
Helix 48	AF3	C	137	146	Right-handed alpha
Helix 49	AF4	C	172	175	Right-handed 310
Helix 50	AF5	C	181	193	Right-handed alpha
Helix 51	AF6	C	194	196	Right-handed 310
Helix 52	AF7	C	205	217	Right-handed alpha
Helix 53	AF8	C	222	231	Right-handed alpha
Helix 54	AF9	C	252	257	Right-handed alpha
Helix 55	AG1	C	258	262	Right-handed 310
Helix 56	AG2	C	263	268	Right-handed 310
Helix 57	AG3	C	273	284	Right-handed alpha
Helix 58	AG4	C	289	295	Right-handed alpha
Helix 59	AG5	C	301	306	Right-handed 310
Helix 60	AG6	C	308	321	Right-handed alpha
Helix 61	AG7	C	334	336	Right-handed 310
Helix 62	AG8	C	337	348	Right-handed alpha
Helix 63	AG9	C	350	355	Right-handed 310
Helix 64	AH1	C	359	366	Right-handed alpha
Helix 65	AH2	C	368	374	Right-handed alpha
Helix 66	AH3	D	52	54	Right-handed 310
Helix 67	AH4	D	60	65	Right-handed alpha
Helix 68	AH5	D	69	73	Right-handed 310
Helix 69	AH6	D	77	91	Right-handed alpha
Helix 70	AH7	D	115	123	Right-handed alpha
Helix 71	AH8	D	133	149	Right-handed alpha
Helix 72	AH9	D	163	179	Right-handed alpha
Helix 73	AI1	D	183	200	Right-handed alpha
Helix 74	AI2	D	239	243	Right-handed 310
Helix 75	AI3	D	252	260	Right-handed alpha
Helix 76	AI4	D	263	271	Right-handed alpha
Helix 77	AI5	D	278	283	Right-handed alpha
Helix 78	AI6	D	293	308	Right-handed alpha
Helix 79	AI7	D	311	330	Right-handed alpha
Helix 80	AI8	D	349	360	Right-handed alpha
Helix 81	AI9	D	362	371	Right-handed alpha
Helix 82	AJ1	D	387	419	Right-handed alpha
Helix 83	AJ2	D	448	473	Right-handed alpha
Helix 84	AJ3	D	476	482	Right-handed alpha
Helix 85	AJ4	D	493	500	Right-handed alpha
Helix 86	AJ5	D	505	516	Right-handed alpha
Helix 87	AJ6	D	520	533	Right-handed alpha
Helix 88	AJ7	D	574	584	Right-handed alpha
Helix 89	AJ8	D	586	593	Right-handed alpha
Helix 90	AJ9	D	602	606	Right-handed 310
Helix 91	AK1	D	609	628	Right-handed alpha
Helix 92	AK2	D	648	660	Right-handed alpha
Helix 93	AK3	D	661	671	Right-handed alpha

There are 24 sheets in PDB entry 9DFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	176	178	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	B	169	170	anti-parallel
Strand 3	B	160	166	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	297	300	parallel
Strand 6	B	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	56	58	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	629	636	parallel
Strand 4	D	152	158	parallel
Strand 5	D	433	439	parallel
Strand 6	D	214	220	anti-parallel
Strand 7	D	229	235	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	210	211	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	343	346	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	374	first strand
Strand 2	D	383	385	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	539	first strand
Strand 2	D	548	552	anti-parallel
Strand 3	D	557	561	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFV