Analysis of interatomic Contacts of Structural Units in PDB entry:
9DFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DFW entry

There are 3 chains in PDB entry 9DFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18SER 301
B
 GLY 18TRP 311
C
 GLY 18SER 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9DFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 65Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
79 93Right-handed alpha
Helix 4
AA4
A
109 117Right-handed alpha
Helix 5
AA5
A
118 120Right-handed 310
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
144 160Right-handed alpha
Helix 8
AA8
A
178 186Right-handed alpha
Helix 9
AA9
A
211 215Right-handed 310
Helix 10
AB1
A
217 228Right-handed alpha
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
269 280Right-handed alpha
Helix 13
AB4
A
284 291Right-handed alpha
Helix 14
AB5
B
50 64Right-handed alpha
Helix 15
AB6
B
75 78Right-handed 310
Helix 16
AB7
B
79 93Right-handed alpha
Helix 17
AB8
B
109 117Right-handed alpha
Helix 18
AB9
B
118 120Right-handed 310
Helix 19
AC1
B
131 139Right-handed alpha
Helix 20
AC2
B
144 160Right-handed alpha
Helix 21
AC3
B
178 186Right-handed alpha
Helix 22
AC4
B
210 215Right-handed 310
Helix 23
AC5
B
217 228Right-handed alpha
Helix 24
AC6
B
238 243Right-handed alpha
Helix 25
AC7
B
258 262Right-handed 310
Helix 26
AC8
B
269 273Right-handed alpha
Helix 27
AC9
B
273 280Right-handed alpha
Helix 28
AD1
B
284 291Right-handed alpha
Helix 29
AD2
B
302 309Right-handed 310
Helix 30
AD3
C
50 65Right-handed alpha
Helix 31
AD4
C
75 78Right-handed 310
Helix 32
AD5
C
79 93Right-handed alpha
Helix 33
AD6
C
109 117Right-handed alpha
Helix 34
AD7
C
118 120Right-handed 310
Helix 35
AD8
C
131 139Right-handed alpha
Helix 36
AD9
C
144 160Right-handed alpha
Helix 37
AE1
C
178 186Right-handed alpha
Helix 38
AE2
C
211 215Right-handed 310
Helix 39
AE3
C
217 228Right-handed alpha
Helix 40
AE4
C
238 243Right-handed alpha
Helix 41
AE5
C
258 262Right-handed 310
Helix 42
AE6
C
269 273Right-handed alpha
Helix 43
AE7
C
273 280Right-handed alpha
Helix 44
AE8
C
284 291Right-handed alpha
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There are 6 sheets in PDB entry 9DFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
189 194parallel
Strand 3
A
162 169parallel
Strand 4
A
122 126parallel
Strand 5
A
98 103parallel
Strand 6
A
68 72parallel
Strand 7
A
23 27parallel
Strand 8
A
248 249parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
264 268anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
189 194parallel
Strand 3
B
162 169parallel
Strand 4
B
122 126parallel
Strand 5
B
98 103parallel
Strand 6
B
68 72parallel
Strand 7
B
23 27parallel
Strand 8
B
247 249parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 257first strand
Strand 2
B
264 268anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 237first strand
Strand 2
C
189 194parallel
Strand 3
C
162 169parallel
Strand 4
C
122 126parallel
Strand 5
C
98 103parallel
Strand 6
C
68 72parallel
Strand 7
C
23 27parallel
Strand 8
C
248 249parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
254 257first strand
Strand 2
C
264 268anti-parallel
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