Analysis of interatomic Contacts of Structural Units in PDB entry:
9DGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DGK entry

There are 2 chains in PDB entry 9DGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 383HIS 784
B
 ASN 380HIS 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9DGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 392Right-handed alpha
Helix 2
AA2
A
397 406Right-handed alpha
Helix 3
AA3
A
411 435Right-handed alpha
Helix 4
AA4
A
441 468Right-handed alpha
Helix 5
AA5
A
469 477Right-handed alpha
Helix 6
AA6
A
479 498Right-handed alpha
Helix 7
AA7
A
515 522Right-handed alpha
Helix 8
AA8
A
524 530Right-handed alpha
Helix 9
AA9
A
531 537Right-handed alpha
Helix 10
AB1
A
543 560Right-handed alpha
Helix 11
AB2
A
561 564Right-handed 310
Helix 12
AB3
A
567 576Right-handed alpha
Helix 13
AB4
A
601 608Right-handed alpha
Helix 14
AB5
A
644 669Right-handed alpha
Helix 15
AB6
A
675 691Right-handed alpha
Helix 16
AB7
A
692 696Right-handed 310
Helix 17
AB8
A
699 715Right-handed alpha
Helix 18
AB9
A
720 730Right-handed alpha
Helix 19
AC1
A
736 741Right-handed alpha
Helix 20
AC2
A
751 758Right-handed alpha
Helix 21
AC3
A
758 769Right-handed alpha
Helix 22
AC4
A
770 773Right-handed 310
Helix 23
AC5
B
383 392Right-handed alpha
Helix 24
AC6
B
397 407Right-handed alpha
Helix 25
AC7
B
411 434Right-handed alpha
Helix 26
AC8
B
438 465Right-handed alpha
Helix 27
AC9
B
469 479Right-handed alpha
Helix 28
AD1
B
479 498Right-handed alpha
Helix 29
AD2
B
515 521Right-handed alpha
Helix 30
AD3
B
524 529Right-handed alpha
Helix 31
AD4
B
531 537Right-handed alpha
Helix 32
AD5
B
543 560Right-handed alpha
Helix 33
AD6
B
561 564Right-handed 310
Helix 34
AD7
B
567 579Right-handed alpha
Helix 35
AD8
B
581 587Right-handed alpha
Helix 36
AD9
B
601 608Right-handed alpha
Helix 37
AE1
B
644 670Right-handed alpha
Helix 38
AE2
B
675 691Right-handed alpha
Helix 39
AE3
B
692 696Right-handed 310
Helix 40
AE4
B
699 715Right-handed alpha
Helix 41
AE5
B
720 730Right-handed alpha
Helix 42
AE6
B
736 741Right-handed alpha
Helix 43
AE7
B
751 759Right-handed alpha
Helix 44
AE8
B
759 772Right-handed alpha
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There are 2 sheets in PDB entry 9DGK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 745first strand
Strand 2
A
748 750anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 745first strand
Strand 2
B
748 750anti-parallel
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