Analysis of interatomic Contacts of Structural Units in PDB entry:
9DGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DGP entry

There is 1 chain in PDB entry 9DGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1327GLU 4646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 9DGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1327 1348Right-handed alpha
Helix 2
AA2
A
1355 1373Right-handed alpha
Helix 3
AA3
A
1374 1379Right-handed alpha
Helix 4
AA4
A
1380 1396Right-handed alpha
Helix 5
AA5
A
1396 1404Right-handed alpha
Helix 6
AA6
A
1410 1420Right-handed alpha
Helix 7
AA7
A
1430 1437Right-handed alpha
Helix 8
AA8
A
1442 1473Right-handed alpha
Helix 9
AA9
A
1489 1508Right-handed alpha
Helix 10
AB1
A
1516 1552Right-handed alpha
Helix 11
AB2
A
1555 1561Right-handed alpha
Helix 12
AB3
A
1561 1585Right-handed alpha
Helix 13
AB4
A
1587 1593Right-handed alpha
Helix 14
AB5
A
1596 1626Right-handed alpha
Helix 15
AB6
A
1627 1632Right-handed 310
Helix 16
AB7
A
1633 1643Right-handed alpha
Helix 17
AB8
A
1646 1652Right-handed 310
Helix 18
AB9
A
1653 1658Right-handed alpha
Helix 19
AC1
A
1697 1729Right-handed alpha
Helix 20
AC2
A
1734 1745Right-handed alpha
Helix 21
AC3
A
1746 1773Right-handed alpha
Helix 22
AC4
A
1775 1798Right-handed alpha
Helix 23
AC5
A
1801 1824Right-handed alpha
Helix 24
AC6
A
1826 1829Right-handed 310
Helix 25
AC7
A
1835 1840Right-handed alpha
Helix 26
AC8
A
1852 1855Right-handed 310
Helix 27
AC9
A
1882 1898Right-handed alpha
Helix 28
AD1
A
1911 1923Right-handed alpha
Helix 29
AD2
A
1940 1952Right-handed alpha
Helix 30
AD3
A
1959 1963Right-handed 310
Helix 31
AD4
A
1964 1985Right-handed alpha
Helix 32
AD5
A
2032 2034Right-handed 310
Helix 33
AD6
A
2045 2057Right-handed alpha
Helix 34
AD7
A
2061 2080Right-handed alpha
Helix 35
AD8
A
2089 2118Right-handed alpha
Helix 36
AD9
A
2123 2130Right-handed alpha
Helix 37
AE1
A
2132 2146Right-handed alpha
Helix 38
AE2
A
2147 2149Right-handed 310
Helix 39
AE3
A
2152 2165Right-handed alpha
Helix 40
AE4
A
2175 2189Right-handed alpha
Helix 41
AE5
A
2200 2217Right-handed alpha
Helix 42
AE6
A
2229 2246Right-handed alpha
Helix 43
AE7
A
2260 2266Right-handed alpha
Helix 44
AE8
A
2278 2290Right-handed alpha
Helix 45
AE9
A
2293 2295Right-handed 310
Helix 46
AF1
A
2315 2320Right-handed alpha
Helix 47
AF2
A
2352 2359Right-handed alpha
Helix 48
AF3
A
2365 2369Right-handed 310
Helix 49
AF4
A
2370 2385Right-handed alpha
Helix 50
AF5
A
2394 2400Right-handed alpha
Helix 51
AF6
A
2410 2424Right-handed alpha
Helix 52
AF7
A
2431 2443Right-handed alpha
Helix 53
AF8
A
2450 2476Right-handed alpha
Helix 54
AF9
A
2482 2503Right-handed alpha
Helix 55
AG1
A
2507 2522Right-handed alpha
Helix 56
AG2
A
2533 2535Right-handed 310
Helix 57
AG3
A
2549 2552Right-handed 310
Helix 58
AG4
A
2571 2587Right-handed alpha
Helix 59
AG5
A
2600 2612Right-handed alpha
Helix 60
AG6
A
2627 2638Right-handed alpha
Helix 61
AG7
A
2677 2689Right-handed alpha
Helix 62
AG8
A
2724 2729Right-handed alpha
Helix 63
AG9
A
2740 2756Right-handed alpha
Helix 64
AH1
A
2757 2758Right-handed 310
Helix 65
AH2
A
2759 2764Right-handed 310
Helix 66
AH3
A
2765 2784Right-handed alpha
Helix 67
AH4
A
2795 2811Right-handed alpha
Helix 68
AH5
A
2817 2833Right-handed alpha
Helix 69
AH6
A
2839 2858Right-handed alpha
Helix 70
AH7
A
2862 2867Right-handed alpha
Helix 71
AH8
A
2885 2903Right-handed alpha
Helix 72
AH9
A
2912 2927Right-handed alpha
Helix 73
AI1
A
2942 2954Right-handed alpha
Helix 74
AI2
A
2968 2985Right-handed alpha
Helix 75
AI3
A
2996 3000Right-handed alpha
Helix 76
AI4
A
3001 3014Right-handed alpha
Helix 77
AI5
A
3023 3041Right-handed alpha
Helix 78
AI6
A
3046 3061Right-handed alpha
Helix 79
AI7
A
3082 3089Right-handed alpha
Helix 80
AI8
A
3098 3110Right-handed alpha
Helix 81
AI9
A
3138 3165Right-handed alpha
Helix 82
AJ1
A
3172 3221Right-handed alpha
Helix 83
AJ2
A
3471 3517Right-handed alpha
Helix 84
AJ3
A
3521 3539Right-handed alpha
Helix 85
AJ4
A
3548 3553Right-handed alpha
Helix 86
AJ5
A
3555 3565Right-handed alpha
Helix 87
AJ6
A
3570 3582Right-handed alpha
Helix 88
AJ7
A
3594 3604Right-handed alpha
Helix 89
AJ8
A
3618 3630Right-handed alpha
Helix 90
AJ9
A
3637 3641Right-handed 310
Helix 91
AK1
A
3642 3644Right-handed 310
Helix 92
AK2
A
3645 3651Right-handed alpha
Helix 93
AK3
A
3689 3696Right-handed alpha
Helix 94
AK4
A
3704 3721Right-handed alpha
Helix 95
AK5
A
3721 3734Right-handed alpha
Helix 96
AK6
A
3736 3755Right-handed alpha
Helix 97
AK7
A
3766 3786Right-handed alpha
Helix 98
AK8
A
3786 3818Right-handed alpha
Helix 99
AK9
A
3819 3821Right-handed 310
Helix 100
AL1
A
3828 3841Right-handed alpha
Helix 101
AL2
A
3843 3847Right-handed 310
Helix 102
AL3
A
3851 3873Right-handed alpha
Helix 103
AL4
A
3874 3875Right-handed 310
Helix 104
AL5
A
3876 3878Right-handed 310
Helix 105
AL6
A
3879 3895Right-handed alpha
Helix 106
AL7
A
3901 3911Right-handed alpha
Helix 107
AL8
A
3928 3939Right-handed alpha
Helix 108
AL9
A
3940 3945Right-handed 310
Helix 109
AM1
A
3946 3954Right-handed alpha
Helix 110
AM2
A
3956 3962Right-handed alpha
Helix 111
AM3
A
3965 3970Right-handed 310
Helix 112
AM4
A
3981 3997Right-handed alpha
Helix 113
AM5
A
4000 4014Right-handed alpha
Helix 114
AM6
A
4018 4023Right-handed alpha
Helix 115
AM7
A
4026 4033Right-handed alpha
Helix 116
AM8
A
4051 4063Right-handed alpha
Helix 117
AM9
A
4073 4091Right-handed alpha
Helix 118
AN1
A
4098 4101Right-handed 310
Helix 119
AN2
A
4102 4116Right-handed alpha
Helix 120
AN3
A
4135 4141Right-handed alpha
Helix 121
AN4
A
4152 4164Right-handed alpha
Helix 122
AN5
A
4165 4171Right-handed alpha
Helix 123
AN6
A
4174 4195Right-handed alpha
Helix 124
AN7
A
4208 4228Right-handed alpha
Helix 125
AN8
A
4239 4250Right-handed alpha
Helix 126
AN9
A
4258 4273Right-handed alpha
Helix 127
AO1
A
4274 4279Right-handed 310
Helix 128
AO2
A
4287 4291Right-handed 310
Helix 129
AO3
A
4301 4311Right-handed alpha
Helix 130
AO4
A
4317 4322Right-handed 310
Helix 131
AO5
A
4325 4346Right-handed alpha
Helix 132
AO6
A
4376 4391Right-handed alpha
Helix 133
AO7
A
4401 4407Right-handed alpha
Helix 134
AO8
A
4407 4440Right-handed alpha
Helix 135
AO9
A
4445 4458Right-handed alpha
Helix 136
AP1
A
4474 4498Right-handed alpha
Helix 137
AP2
A
4502 4507Right-handed alpha
Helix 138
AP3
A
4516 4533Right-handed alpha
Helix 139
AP4
A
4535 4537Right-handed 310
Helix 140
AP5
A
4631 4638Right-handed alpha
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There are 20 sheets in PDB entry 9DGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1476 1480first strand
Strand 2
A
1484 1488anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1663 1666first strand
Strand 2
A
1672 1677anti-parallel
Strand 3
A
1683 1691anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1843 1846first strand
Strand 2
A
1857 1861anti-parallel
Strand 3
A
1864 1867anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1901 1905first strand
Strand 2
A
2036 2040parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1927 1930first strand
Strand 2
A
1954 1957parallel
Strand 3
A
2013 2016parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1998 2001first strand
Strand 2
A
2004 2007anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2248 2251first strand
Strand 2
A
2297 2302parallel
Strand 3
A
2340 2344parallel
Strand 4
A
2219 2222parallel
Strand 5
A
2360 2362parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2267 2268first strand
Strand 2
A
2275 2276anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2324 2326first strand
Strand 2
A
2332 2334anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2537 2539first strand
Strand 2
A
2545 2547anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2615 2620first strand
Strand 2
A
2658 2663parallel
Strand 3
A
2706 2712parallel
Strand 4
A
2592 2594parallel
Strand 5
A
2733 2735parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2639 2643first strand
Strand 2
A
2648 2652anti-parallel
Strand 3
A
2700 2703parallel
Strand 4
A
2691 2693anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2873 2874first strand
Strand 2
A
2882 2883anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2957 2960first strand
Strand 2
A
2990 2995parallel
Strand 3
A
3062 3068parallel
Strand 4
A
2933 2937parallel
Strand 5
A
3090 3094parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3610 3613first strand
Strand 2
A
3633 3636parallel
Strand 3
A
3677 3680parallel
Strand 4
A
3587 3589parallel
Strand 5
A
3697 3699parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3661 3664first strand
Strand 2
A
3667 3670anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4066 4070first strand
Strand 2
A
4093 4097parallel
Strand 3
A
4123 4128parallel
Strand 4
A
4041 4045parallel
Strand 5
A
4143 4147parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4283 4285first strand
Strand 2
A
4294 4295anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4509 4510first strand
Strand 2
A
4557 4561parallel
Strand 3
A
4587 4594anti-parallel
Strand 4
A
4539 4546anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4568 4571first strand
Strand 2
A
4574 4577anti-parallel
Strand 3
A
4618 4626parallel
Strand 4
A
4604 4610anti-parallel
Strand 5
A
4641 4643parallel
Strand 6
A
4564 4566anti-parallel
Strand 7
A
4583 4584anti-parallel
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