Analysis of interatomic Contacts of Structural Units in PDB entry:
9DGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DGW entry

There are 3 chains in PDB entry 9DGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 17ASN 295
B
 GLY 17SER 298
C
 GLN 18SER 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9DGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 63Right-handed alpha
Helix 2
AA2
A
74 77Right-handed 310
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
117 119Right-handed 310
Helix 6
AA6
A
130 138Right-handed alpha
Helix 7
AA7
A
143 159Right-handed alpha
Helix 8
AA8
A
177 185Right-handed alpha
Helix 9
AA9
A
210 214Right-handed 310
Helix 10
AB1
A
216 227Right-handed alpha
Helix 11
AB2
A
237 242Right-handed alpha
Helix 12
AB3
A
265 270Right-handed alpha
Helix 13
AB4
A
270 277Right-handed alpha
Helix 14
AB5
A
281 288Right-handed alpha
Helix 15
AB6
B
49 64Right-handed alpha
Helix 16
AB7
B
74 77Right-handed 310
Helix 17
AB8
B
78 92Right-handed alpha
Helix 18
AB9
B
108 116Right-handed alpha
Helix 19
AC1
B
117 119Right-handed 310
Helix 20
AC2
B
130 137Right-handed alpha
Helix 21
AC3
B
143 159Right-handed alpha
Helix 22
AC4
B
177 185Right-handed alpha
Helix 23
AC5
B
210 214Right-handed 310
Helix 24
AC6
B
216 226Right-handed alpha
Helix 25
AC7
B
237 242Right-handed alpha
Helix 26
AC8
B
265 276Right-handed alpha
Helix 27
AC9
B
281 288Right-handed alpha
Helix 28
AD1
C
49 63Right-handed alpha
Helix 29
AD2
C
74 77Right-handed 310
Helix 30
AD3
C
78 92Right-handed alpha
Helix 31
AD4
C
108 116Right-handed alpha
Helix 32
AD5
C
117 119Right-handed 310
Helix 33
AD6
C
130 138Right-handed alpha
Helix 34
AD7
C
143 158Right-handed alpha
Helix 35
AD8
C
177 185Right-handed alpha
Helix 36
AD9
C
209 213Right-handed 310
Helix 37
AE1
C
216 226Right-handed alpha
Helix 38
AE2
C
237 242Right-handed alpha
Helix 39
AE3
C
265 270Right-handed alpha
Helix 40
AE4
C
270 276Right-handed alpha
Helix 41
AE5
C
281 288Right-handed alpha
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There are 3 sheets in PDB entry 9DGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
188 193parallel
Strand 3
A
161 168parallel
Strand 4
A
121 125parallel
Strand 5
A
97 102parallel
Strand 6
A
67 71parallel
Strand 7
A
22 26parallel
Strand 8
A
247 248parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
188 193parallel
Strand 3
B
161 168parallel
Strand 4
B
121 125parallel
Strand 5
B
97 102parallel
Strand 6
B
67 71parallel
Strand 7
B
22 26parallel
Strand 8
B
247 248parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 236first strand
Strand 2
C
188 193parallel
Strand 3
C
161 168parallel
Strand 4
C
121 125parallel
Strand 5
C
97 102parallel
Strand 6
C
67 71parallel
Strand 7
C
22 26parallel
Strand 8
C
246 248parallel
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