Analysis of interatomic Contacts of Structural Units in PDB entry:
9DH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DH2 entry

There are 7 chains in PDB entry 9DH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	LYS 218
D	ASP 1	GLU 211
G	VAL 2	LYS 218
H	ASP 1	GLU 211
K	VAL 2	LYS 218
L	ASP 1	GLU 211
M	THR 92	TYR 111

There are 33 helices in PDB entry 9DH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	160	162	Right-handed 310
Helix 3	AA3	A	205	208	Right-handed 310
Helix 4	AA4	D	79	83	Right-handed 310
Helix 5	AA5	D	121	127	Right-handed alpha
Helix 6	AA6	D	183	187	Right-handed alpha
Helix 7	AA7	G	87	91	Right-handed 310
Helix 8	AA8	G	160	162	Right-handed 310
Helix 9	AA9	G	191	195	Right-handed 310
Helix 10	AB1	G	205	208	Right-handed 310
Helix 11	AB2	H	79	83	Right-handed 310
Helix 12	AB3	H	121	127	Right-handed alpha
Helix 13	AB4	H	183	187	Right-handed alpha
Helix 14	AB5	K	87	91	Right-handed 310
Helix 15	AB6	K	160	162	Right-handed 310
Helix 16	AB7	K	205	208	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	121	127	Right-handed alpha
Helix 19	AC1	L	183	187	Right-handed alpha
Helix 20	AC2	M	119	130	Right-handed alpha
Helix 21	AC3	M	143	148	Right-handed 310
Helix 22	AC4	P	87	91	Right-handed 310
Helix 23	AC5	P	160	162	Right-handed 310
Helix 24	AC6	P	205	208	Right-handed 310
Helix 25	AC7	Q	79	83	Right-handed 310
Helix 26	AC8	Q	121	127	Right-handed alpha
Helix 27	AC9	Q	183	187	Right-handed alpha
Helix 28	AD1	R	119	130	Right-handed alpha
Helix 29	AD2	R	143	149	Right-handed 310
Helix 30	AD3	S	119	130	Right-handed alpha
Helix 31	AD4	S	143	149	Right-handed 310
Helix 32	AD5	T	119	130	Right-handed alpha
Helix 33	AD6	T	143	149	Right-handed 310

There are 49 sheets in PDB entry 9DH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	111	115	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	111	115	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	104	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	167	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	173	174	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	158	first strand
Strand 2	A	198	204	anti-parallel
Strand 3	A	209	215	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	201	208	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	111	115	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	111	115	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	104	107	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	G	139	149	anti-parallel
Strand 3	G	180	189	anti-parallel
Strand 4	G	167	169	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	G	139	149	anti-parallel
Strand 3	G	180	189	anti-parallel
Strand 4	G	173	174	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	158	first strand
Strand 2	G	198	204	anti-parallel
Strand 3	G	209	215	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	154	first strand
Strand 2	H	145	150	anti-parallel
Strand 3	H	191	197	anti-parallel
Strand 4	H	202	208	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	18	23	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	111	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	111	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	104	107	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	180	189	anti-parallel
Strand 4	K	167	169	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	180	189	anti-parallel
Strand 4	K	173	174	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	158	first strand
Strand 2	K	198	204	anti-parallel
Strand 3	K	209	215	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	201	208	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	104	105	first strand
Strand 2	M	110	118	anti-parallel
Strand 3	M	207	213	anti-parallel
Strand 4	M	133	134	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	166	168	first strand
Strand 2	M	153	159	anti-parallel
Strand 3	M	189	193	anti-parallel
Strand 4	M	197	201	anti-parallel
Strand 5	M	180	182	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	6	first strand
Strand 2	P	18	24	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	111	115	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	33	39	anti-parallel
Strand 5	P	45	52	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	111	115	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	104	107	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	124	128	first strand
Strand 2	P	139	149	anti-parallel
Strand 3	P	180	189	anti-parallel
Strand 4	P	167	169	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	124	128	first strand
Strand 2	P	139	149	anti-parallel
Strand 3	P	180	189	anti-parallel
Strand 4	P	173	174	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	155	158	first strand
Strand 2	P	198	204	anti-parallel
Strand 3	P	209	215	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	7	first strand
Strand 2	Q	19	25	anti-parallel
Strand 3	Q	70	75	anti-parallel
Strand 4	Q	62	67	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	84	90	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	45	49	anti-parallel
Strand 6	Q	53	54	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	114	118	first strand
Strand 2	Q	129	139	anti-parallel
Strand 3	Q	173	182	anti-parallel
Strand 4	Q	159	163	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	153	154	first strand
Strand 2	Q	145	150	anti-parallel
Strand 3	Q	191	198	anti-parallel
Strand 4	Q	201	208	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	104	105	first strand
Strand 2	R	109	118	anti-parallel
Strand 3	R	207	214	anti-parallel
Strand 4	R	153	160	parallel
Strand 5	R	165	168	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	133	134	first strand
Strand 2	R	207	214	anti-parallel
Strand 3	R	153	160	parallel
Strand 4	R	189	193	anti-parallel
Strand 5	R	197	201	anti-parallel
Strand 6	R	180	182	parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	93	99	first strand
Strand 2	T	94	100	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	104	105	first strand
Strand 2	S	110	118	anti-parallel
Strand 3	S	207	213	anti-parallel
Strand 4	S	133	134	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	166	168	first strand
Strand 2	S	153	159	anti-parallel
Strand 3	S	189	193	anti-parallel
Strand 4	S	197	201	anti-parallel
Strand 5	S	180	182	parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	104	105	first strand
Strand 2	T	109	118	anti-parallel
Strand 3	T	207	214	anti-parallel
Strand 4	T	153	160	parallel
Strand 5	T	165	168	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	133	134	first strand
Strand 2	T	207	214	anti-parallel
Strand 3	T	153	160	parallel
Strand 4	T	189	193	anti-parallel
Strand 5	T	197	201	anti-parallel
Strand 6	T	180	182	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DH2