Analysis of interatomic Contacts of Structural Units in PDB entry:
9DH4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DH4 entry

There are 2 chains in PDB entry 9DH4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ILE 325
B
 SER 11ILE 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9DH4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
40 63Right-handed alpha
Helix 3
AA3
A
89 110Right-handed alpha
Helix 4
AA4
A
125 130Right-handed alpha
Helix 5
AA5
A
132 151Right-handed alpha
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
172 185Right-handed alpha
Helix 8
AA8
A
187 197Right-handed alpha
Helix 9
AA9
A
198 216Right-handed alpha
Helix 10
AB1
A
225 254Right-handed alpha
Helix 11
AB2
A
285 289Right-handed 310
Helix 12
AB3
A
302 308Right-handed alpha
Helix 13
AB4
B
12 30Right-handed alpha
Helix 14
AB5
B
40 63Right-handed alpha
Helix 15
AB6
B
89 110Right-handed alpha
Helix 16
AB7
B
121 130Right-handed alpha
Helix 17
AB8
B
132 151Right-handed alpha
Helix 18
AB9
B
172 185Right-handed alpha
Helix 19
AC1
B
187 198Right-handed alpha
Helix 20
AC2
B
198 217Right-handed alpha
Helix 21
AC3
B
224 254Right-handed alpha
Helix 22
AC4
B
302 309Right-handed alpha
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There are 4 sheets in PDB entry 9DH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
114 119parallel
Strand 3
A
66 71parallel
Strand 4
A
258 261parallel
Strand 5
A
272 273parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
319 324parallel
Strand 4
A
312 316anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
114 119parallel
Strand 3
B
66 71parallel
Strand 4
B
258 261parallel
Strand 5
B
272 273parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
290 294anti-parallel
Strand 3
B
319 325parallel
Strand 4
B
312 316anti-parallel
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