Analysis of interatomic Contacts of Structural Units in PDB entry:
9DH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DH8 entry

There is 1 chain in PDB entry 9DH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1622THR 4645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 9DH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1628 1632Right-handed 310
Helix 2
AA2
A
1633 1643Right-handed alpha
Helix 3
AA3
A
1646 1649Right-handed 310
Helix 4
AA4
A
1650 1658Right-handed alpha
Helix 5
AA5
A
1697 1728Right-handed alpha
Helix 6
AA6
A
1734 1745Right-handed alpha
Helix 7
AA7
A
1746 1769Right-handed alpha
Helix 8
AA8
A
1770 1772Right-handed 310
Helix 9
AA9
A
1777 1798Right-handed alpha
Helix 10
AB1
A
1801 1829Right-handed alpha
Helix 11
AB2
A
1835 1840Right-handed alpha
Helix 12
AB3
A
1882 1898Right-handed alpha
Helix 13
AB4
A
1911 1923Right-handed alpha
Helix 14
AB5
A
1938 1952Right-handed alpha
Helix 15
AB6
A
1959 1963Right-handed 310
Helix 16
AB7
A
1964 1986Right-handed alpha
Helix 17
AB8
A
2045 2057Right-handed alpha
Helix 18
AB9
A
2061 2080Right-handed alpha
Helix 19
AC1
A
2089 2118Right-handed alpha
Helix 20
AC2
A
2123 2130Right-handed alpha
Helix 21
AC3
A
2133 2146Right-handed alpha
Helix 22
AC4
A
2147 2149Right-handed 310
Helix 23
AC5
A
2152 2165Right-handed alpha
Helix 24
AC6
A
2175 2190Right-handed alpha
Helix 25
AC7
A
2200 2217Right-handed alpha
Helix 26
AC8
A
2229 2246Right-handed alpha
Helix 27
AC9
A
2260 2265Right-handed alpha
Helix 28
AD1
A
2278 2290Right-handed alpha
Helix 29
AD2
A
2311 2316Right-handed alpha
Helix 30
AD3
A
2352 2359Right-handed alpha
Helix 31
AD4
A
2370 2385Right-handed alpha
Helix 32
AD5
A
2411 2424Right-handed alpha
Helix 33
AD6
A
2431 2443Right-handed alpha
Helix 34
AD7
A
2450 2476Right-handed alpha
Helix 35
AD8
A
2482 2503Right-handed alpha
Helix 36
AD9
A
2507 2522Right-handed alpha
Helix 37
AE1
A
2533 2535Right-handed 310
Helix 38
AE2
A
2548 2552Right-handed alpha
Helix 39
AE3
A
2558 2562Right-handed 310
Helix 40
AE4
A
2571 2587Right-handed alpha
Helix 41
AE5
A
2600 2612Right-handed alpha
Helix 42
AE6
A
2628 2638Right-handed alpha
Helix 43
AE7
A
2677 2690Right-handed alpha
Helix 44
AE8
A
2724 2729Right-handed alpha
Helix 45
AE9
A
2740 2756Right-handed alpha
Helix 46
AF1
A
2757 2758Right-handed 310
Helix 47
AF2
A
2759 2764Right-handed 310
Helix 48
AF3
A
2765 2784Right-handed alpha
Helix 49
AF4
A
2795 2811Right-handed alpha
Helix 50
AF5
A
2817 2834Right-handed alpha
Helix 51
AF6
A
2839 2858Right-handed alpha
Helix 52
AF7
A
2862 2867Right-handed alpha
Helix 53
AF8
A
2885 2904Right-handed alpha
Helix 54
AF9
A
2912 2928Right-handed alpha
Helix 55
AG1
A
2942 2954Right-handed alpha
Helix 56
AG2
A
2968 2985Right-handed alpha
Helix 57
AG3
A
3001 3015Right-handed alpha
Helix 58
AG4
A
3023 3041Right-handed alpha
Helix 59
AG5
A
3046 3062Right-handed alpha
Helix 60
AG6
A
3071 3082Right-handed alpha
Helix 61
AG7
A
3083 3088Right-handed alpha
Helix 62
AG8
A
3098 3110Right-handed alpha
Helix 63
AG9
A
3138 3165Right-handed alpha
Helix 64
AH1
A
3172 3219Right-handed alpha
Helix 65
AH2
A
3473 3516Right-handed alpha
Helix 66
AH3
A
3521 3539Right-handed alpha
Helix 67
AH4
A
3548 3553Right-handed alpha
Helix 68
AH5
A
3555 3565Right-handed alpha
Helix 69
AH6
A
3570 3582Right-handed alpha
Helix 70
AH7
A
3594 3604Right-handed alpha
Helix 71
AH8
A
3618 3630Right-handed alpha
Helix 72
AH9
A
3642 3644Right-handed 310
Helix 73
AI1
A
3645 3650Right-handed alpha
Helix 74
AI2
A
3689 3696Right-handed alpha
Helix 75
AI3
A
3704 3720Right-handed alpha
Helix 76
AI4
A
3721 3737Right-handed alpha
Helix 77
AI5
A
3737 3755Right-handed alpha
Helix 78
AI6
A
3766 3791Right-handed alpha
Helix 79
AI7
A
3793 3801Right-handed alpha
Helix 80
AI8
A
3801 3818Right-handed alpha
Helix 81
AI9
A
3828 3841Right-handed alpha
Helix 82
AJ1
A
3843 3847Right-handed 310
Helix 83
AJ2
A
3851 3872Right-handed alpha
Helix 84
AJ3
A
3873 3875Right-handed 310
Helix 85
AJ4
A
3876 3878Right-handed 310
Helix 86
AJ5
A
3879 3895Right-handed alpha
Helix 87
AJ6
A
3901 3911Right-handed alpha
Helix 88
AJ7
A
3912 3914Right-handed 310
Helix 89
AJ8
A
3928 3939Right-handed alpha
Helix 90
AJ9
A
3940 3945Right-handed 310
Helix 91
AK1
A
3946 3954Right-handed alpha
Helix 92
AK2
A
3956 3962Right-handed alpha
Helix 93
AK3
A
3965 3970Right-handed 310
Helix 94
AK4
A
3981 3997Right-handed alpha
Helix 95
AK5
A
4000 4014Right-handed alpha
Helix 96
AK6
A
4018 4023Right-handed alpha
Helix 97
AK7
A
4026 4033Right-handed alpha
Helix 98
AK8
A
4051 4062Right-handed alpha
Helix 99
AK9
A
4073 4091Right-handed alpha
Helix 100
AL1
A
4099 4101Right-handed 310
Helix 101
AL2
A
4102 4115Right-handed alpha
Helix 102
AL3
A
4135 4141Right-handed alpha
Helix 103
AL4
A
4152 4164Right-handed alpha
Helix 104
AL5
A
4165 4170Right-handed alpha
Helix 105
AL6
A
4174 4194Right-handed alpha
Helix 106
AL7
A
4196 4201Right-handed alpha
Helix 107
AL8
A
4208 4227Right-handed alpha
Helix 108
AL9
A
4239 4250Right-handed alpha
Helix 109
AM1
A
4258 4273Right-handed alpha
Helix 110
AM2
A
4274 4279Right-handed 310
Helix 111
AM3
A
4301 4311Right-handed alpha
Helix 112
AM4
A
4317 4321Right-handed 310
Helix 113
AM5
A
4326 4346Right-handed alpha
Helix 114
AM6
A
4375 4391Right-handed alpha
Helix 115
AM7
A
4401 4407Right-handed alpha
Helix 116
AM8
A
4407 4439Right-handed alpha
Helix 117
AM9
A
4445 4458Right-handed alpha
Helix 118
AN1
A
4474 4499Right-handed alpha
Helix 119
AN2
A
4500 4506Right-handed alpha
Helix 120
AN3
A
4516 4532Right-handed alpha
Helix 121
AN4
A
4535 4537Right-handed 310
Helix 122
AN5
A
4631 4638Right-handed alpha
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There are 17 sheets in PDB entry 9DH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1661 1666first strand
Strand 2
A
1672 1678anti-parallel
Strand 3
A
1683 1691anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1843 1846first strand
Strand 2
A
1857 1861anti-parallel
Strand 3
A
1864 1867anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1902 1905first strand
Strand 2
A
2037 2040parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1927 1931first strand
Strand 2
A
1954 1958parallel
Strand 3
A
2014 2016parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1998 2001first strand
Strand 2
A
2004 2007anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2249 2253first strand
Strand 2
A
2298 2302parallel
Strand 3
A
2339 2342parallel
Strand 4
A
2219 2223parallel
Strand 5
A
2360 2363parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2266 2268first strand
Strand 2
A
2275 2277anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2324 2326first strand
Strand 2
A
2332 2334anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2537 2540first strand
Strand 2
A
2544 2547anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2617 2620first strand
Strand 2
A
2659 2663parallel
Strand 3
A
2706 2712parallel
Strand 4
A
2591 2594parallel
Strand 5
A
2733 2735parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2639 2642first strand
Strand 2
A
2649 2652anti-parallel
Strand 3
A
2700 2703parallel
Strand 4
A
2691 2693anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2957 2960first strand
Strand 2
A
2990 2995parallel
Strand 3
A
3063 3068parallel
Strand 4
A
2933 2936parallel
Strand 5
A
3090 3093parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3610 3612first strand
Strand 2
A
3633 3635parallel
Strand 3
A
3677 3681parallel
Strand 4
A
3587 3590parallel
Strand 5
A
3697 3700parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3654 3656first strand
Strand 2
A
3659 3664anti-parallel
Strand 3
A
3667 3670anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4066 4070first strand
Strand 2
A
4093 4097parallel
Strand 3
A
4123 4129parallel
Strand 4
A
4041 4045parallel
Strand 5
A
4143 4147parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4509 4510first strand
Strand 2
A
4557 4561parallel
Strand 3
A
4587 4594anti-parallel
Strand 4
A
4539 4546anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4568 4571first strand
Strand 2
A
4574 4577anti-parallel
Strand 3
A
4618 4626parallel
Strand 4
A
4604 4610anti-parallel
Strand 5
A
4641 4643parallel
Strand 6
A
4564 4566anti-parallel
Strand 7
A
4583 4584anti-parallel
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