Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DHE entry

There is 1 chain in PDB entry 9DHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 29TRP 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9DHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
65 71Right-handed 310
Helix 3
AA3
A
121 123Right-handed 310
Helix 4
AA4
A
438 444Right-handed alpha
Helix 5
AA5
A
578 580Right-handed 310
Helix 6
AA6
A
619 623Right-handed 310
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There are 4 sheets in PDB entry 9DHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
125 132anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
100 103parallel
Strand 5
A
106 107anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
88 91anti-parallel
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There are 24 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
516 538parallel
Strand 3
A
541 554anti-parallel
Strand 4
A
568 577anti-parallel
Strand 5
A
582 591anti-parallel
Strand 6
A
607 617anti-parallel
Strand 7
A
625 632anti-parallel
Strand 8
A
651 659anti-parallel
Strand 9
A
165 174anti-parallel
Strand 10
A
179 189anti-parallel
Strand 11
A
193 204anti-parallel
Strand 12
A
218 230anti-parallel
Strand 13
A
236 252anti-parallel
Strand 14
A
267 283anti-parallel
Strand 15
A
293 305anti-parallel
Strand 16
A
315 331anti-parallel
Strand 17
A
337 355anti-parallel
Strand 18
A
364 379anti-parallel
Strand 19
A
384 398anti-parallel
Strand 20
A
405 418anti-parallel
Strand 21
A
424 433anti-parallel
Strand 22
A
469 481anti-parallel
Strand 23
A
490 511anti-parallel
Strand 24
A
516 538anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
214 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il