Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DHK entry

There are 5 chains in PDB entry 9DHK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 484	LYS 625
B	ALA 13	PRO 147
D	SER 481	LYS 625
E	UNK 12	PRO 147
G	UNK 479	MET 561

There are 38 helices in PDB entry 9DHK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	493	500	Right-handed alpha
Helix 2	AA2	A	523	527	Right-handed 310
Helix 3	AA3	A	546	555	Right-handed alpha
Helix 4	AA4	A	557	565	Right-handed alpha
Helix 5	AA5	A	567	588	Right-handed alpha
Helix 6	AA6	A	612	623	Right-handed alpha
Helix 7	AA7	B	26	33	Right-handed alpha
Helix 8	AA8	B	85	89	Right-handed 310
Helix 9	AA9	B	129	145	Right-handed alpha
Helix 10	AB1	D	493	500	Right-handed alpha
Helix 11	AB2	D	523	527	Right-handed 310
Helix 12	AB3	D	546	555	Right-handed alpha
Helix 13	AB4	D	557	565	Right-handed alpha
Helix 14	AB5	D	567	588	Right-handed alpha
Helix 15	AB6	D	598	600	Right-handed 310
Helix 16	AB7	D	612	623	Right-handed alpha
Helix 17	AB8	E	26	33	Right-handed alpha
Helix 18	AB9	E	85	89	Right-handed 310
Helix 19	AC1	E	129	146	Right-handed alpha
Helix 20	AC2	G	493	500	Right-handed alpha
Helix 21	AC3	G	523	527	Right-handed 310
Helix 22	AC4	G	546	555	Right-handed alpha
Helix 23	AC5	G	557	565	Right-handed alpha
Helix 24	AC6	G	567	588	Right-handed alpha
Helix 25	AC7	G	598	600	Right-handed 310
Helix 26	AC8	G	612	624	Right-handed alpha
Helix 27	AC9	H	26	33	Right-handed alpha
Helix 28	AD1	H	85	89	Right-handed 310
Helix 29	AD2	H	129	145	Right-handed alpha
Helix 30	AD3	J	493	500	Right-handed alpha
Helix 31	AD4	J	523	527	Right-handed 310
Helix 32	AD5	J	546	555	Right-handed alpha
Helix 33	AD6	J	557	565	Right-handed alpha
Helix 34	AD7	J	567	588	Right-handed alpha
Helix 35	AD8	J	612	623	Right-handed alpha
Helix 36	AD9	K	26	33	Right-handed alpha
Helix 37	AE1	K	85	89	Right-handed 310
Helix 38	AE2	K	129	145	Right-handed alpha

There are 16 sheets in PDB entry 9DHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	517	first strand
Strand 2	A	531	535	anti-parallel
Strand 3	A	540	545	anti-parallel
Strand 4	A	602	609	parallel
Strand 5	A	589	597	anti-parallel
Strand 6	A	506	517	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	57	68	parallel
Strand 3	B	101	110	anti-parallel
Strand 4	B	116	124	anti-parallel
Strand 5	B	79	84	parallel
Strand 6	B	71	76	anti-parallel
Strand 7	B	57	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	40	45	anti-parallel
Strand 3	B	50	55	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	517	first strand
Strand 2	D	531	535	anti-parallel
Strand 3	D	540	545	anti-parallel
Strand 4	D	602	609	parallel
Strand 5	D	589	597	anti-parallel
Strand 6	D	506	517	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	24	first strand
Strand 2	E	58	68	parallel
Strand 3	E	101	110	anti-parallel
Strand 4	E	116	124	anti-parallel
Strand 5	E	79	84	parallel
Strand 6	E	71	76	anti-parallel
Strand 7	E	58	68	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	40	45	anti-parallel
Strand 3	E	50	54	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	506	517	first strand
Strand 2	G	531	535	anti-parallel
Strand 3	G	540	545	anti-parallel
Strand 4	G	602	609	parallel
Strand 5	G	589	597	anti-parallel
Strand 6	G	506	517	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	58	68	parallel
Strand 3	H	101	110	anti-parallel
Strand 4	H	116	124	anti-parallel
Strand 5	H	79	84	parallel
Strand 6	H	71	76	anti-parallel
Strand 7	H	58	68	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	42	45	anti-parallel
Strand 3	H	50	54	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	506	517	first strand
Strand 2	J	531	535	anti-parallel
Strand 3	J	540	545	anti-parallel
Strand 4	J	602	609	parallel
Strand 5	J	589	597	anti-parallel
Strand 6	J	506	517	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	23	24	first strand
Strand 2	K	57	68	parallel
Strand 3	K	101	110	anti-parallel
Strand 4	K	116	124	anti-parallel
Strand 5	K	79	84	parallel
Strand 6	K	71	76	anti-parallel
Strand 7	K	57	68	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	37	first strand
Strand 2	K	40	45	anti-parallel
Strand 3	K	50	54	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	109	112	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	105	first strand
Strand 2	F	109	112	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	105	first strand
Strand 2	I	109	112	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	105	first strand
Strand 2	L	109	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DHK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHK