Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DHM entry

There are 2 chains in PDB entry 9DHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ILE 325
B
 SER 11ILE 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9DHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
40 62Right-handed alpha
Helix 3
AA3
A
89 110Right-handed alpha
Helix 4
AA4
A
121 130Right-handed alpha
Helix 5
AA5
A
132 151Right-handed alpha
Helix 6
AA6
A
172 185Right-handed alpha
Helix 7
AA7
A
187 198Right-handed alpha
Helix 8
AA8
A
198 216Right-handed alpha
Helix 9
AA9
A
226 254Right-handed alpha
Helix 10
AB1
A
285 289Right-handed 310
Helix 11
AB2
A
302 309Right-handed alpha
Helix 12
AB3
B
12 30Right-handed alpha
Helix 13
AB4
B
40 63Right-handed alpha
Helix 14
AB5
B
89 110Right-handed alpha
Helix 15
AB6
B
121 124Right-handed 310
Helix 16
AB7
B
125 130Right-handed alpha
Helix 17
AB8
B
132 150Right-handed alpha
Helix 18
AB9
B
172 185Right-handed alpha
Helix 19
AC1
B
187 196Right-handed alpha
Helix 20
AC2
B
198 218Right-handed alpha
Helix 21
AC3
B
225 254Right-handed alpha
Helix 22
AC4
B
285 289Right-handed 310
Helix 23
AC5
B
302 310Right-handed alpha
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There are 4 sheets in PDB entry 9DHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
114 120parallel
Strand 3
A
66 72parallel
Strand 4
A
258 261parallel
Strand 5
A
271 273parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
320 324parallel
Strand 4
A
312 315anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
114 119parallel
Strand 3
B
66 71parallel
Strand 4
B
258 261parallel
Strand 5
B
272 273parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
290 294anti-parallel
Strand 3
B
320 325parallel
Strand 4
B
313 315anti-parallel
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