Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DHQ entry

There are 8 chains in PDB entry 9DHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 391	ALA 820
B	GLU 391	ARG 819
C	GLU 391	ALA 820
D	GLU 391	ARG 819
E	ARG 5	GLY 209
F	ARG 5	GLY 209
G	ARG 5	GLY 209
H	ARG 5	GLY 209

There are101 helices in PDB entry 9DHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	423	437	Right-handed alpha
Helix 2	AA2	A	461	469	Right-handed alpha
Helix 3	AA3	A	482	487	Right-handed alpha
Helix 4	AA4	A	515	519	Right-handed 310
Helix 5	AA5	A	522	545	Right-handed alpha
Helix 6	AA6	A	565	569	Right-handed 310
Helix 7	AA7	A	572	585	Right-handed alpha
Helix 8	AA8	A	595	627	Right-handed alpha
Helix 9	AA9	A	636	641	Right-handed 310
Helix 10	AB1	A	653	662	Right-handed alpha
Helix 11	AB2	A	664	675	Right-handed alpha
Helix 12	AB3	A	685	697	Right-handed alpha
Helix 13	AB4	A	706	713	Right-handed alpha
Helix 14	AB5	A	742	756	Right-handed alpha
Helix 15	AB6	A	757	768	Right-handed alpha
Helix 16	AB7	A	788	791	Right-handed 310
Helix 17	AB8	A	792	818	Right-handed alpha
Helix 18	AB9	B	417	419	Right-handed 310
Helix 19	AC1	B	423	435	Right-handed alpha
Helix 20	AC2	B	464	469	Right-handed alpha
Helix 21	AC3	B	483	488	Right-handed 310
Helix 22	AC4	B	515	519	Right-handed 310
Helix 23	AC5	B	522	544	Right-handed alpha
Helix 24	AC6	B	572	585	Right-handed alpha
Helix 25	AC7	B	597	620	Right-handed alpha
Helix 26	AC8	B	621	625	Right-handed 310
Helix 27	AC9	B	637	641	Right-handed 310
Helix 28	AD1	B	653	661	Right-handed alpha
Helix 29	AD2	B	666	675	Right-handed alpha
Helix 30	AD3	B	685	696	Right-handed alpha
Helix 31	AD4	B	706	714	Right-handed alpha
Helix 32	AD5	B	742	756	Right-handed alpha
Helix 33	AD6	B	757	768	Right-handed alpha
Helix 34	AD7	B	788	814	Right-handed alpha
Helix 35	AD8	C	417	419	Right-handed 310
Helix 36	AD9	C	423	437	Right-handed alpha
Helix 37	AE1	C	461	469	Right-handed alpha
Helix 38	AE2	C	482	487	Right-handed alpha
Helix 39	AE3	C	522	545	Right-handed alpha
Helix 40	AE4	C	565	569	Right-handed 310
Helix 41	AE5	C	572	584	Right-handed alpha
Helix 42	AE6	C	595	630	Right-handed alpha
Helix 43	AE7	C	636	641	Right-handed alpha
Helix 44	AE8	C	653	662	Right-handed alpha
Helix 45	AE9	C	664	677	Right-handed alpha
Helix 46	AF1	C	685	696	Right-handed alpha
Helix 47	AF2	C	706	713	Right-handed alpha
Helix 48	AF3	C	742	756	Right-handed alpha
Helix 49	AF4	C	757	768	Right-handed alpha
Helix 50	AF5	C	788	791	Right-handed 310
Helix 51	AF6	C	792	820	Right-handed alpha
Helix 52	AF7	D	411	415	Right-handed 310
Helix 53	AF8	D	417	419	Right-handed 310
Helix 54	AF9	D	423	437	Right-handed alpha
Helix 55	AG1	D	463	469	Right-handed alpha
Helix 56	AG2	D	483	488	Right-handed 310
Helix 57	AG3	D	515	519	Right-handed 310
Helix 58	AG4	D	522	542	Right-handed alpha
Helix 59	AG5	D	572	585	Right-handed alpha
Helix 60	AG6	D	595	620	Right-handed alpha
Helix 61	AG7	D	637	642	Right-handed 310
Helix 62	AG8	D	653	662	Right-handed alpha
Helix 63	AG9	D	664	675	Right-handed alpha
Helix 64	AH1	D	685	694	Right-handed alpha
Helix 65	AH2	D	706	714	Right-handed alpha
Helix 66	AH3	D	740	743	Right-handed 310
Helix 67	AH4	D	744	756	Right-handed alpha
Helix 68	AH5	D	757	769	Right-handed alpha
Helix 69	AH6	D	774	778	Right-handed 310
Helix 70	AH7	D	788	817	Right-handed alpha
Helix 71	AH8	E	7	22	Right-handed alpha
Helix 72	AH9	E	23	26	Right-handed 310
Helix 73	AI1	E	94	104	Right-handed alpha
Helix 74	AI2	E	104	122	Right-handed alpha
Helix 75	AI3	E	131	160	Right-handed alpha
Helix 76	AI4	E	176	204	Right-handed alpha
Helix 77	AI5	E	204	209	Right-handed alpha
Helix 78	AI6	F	6	13	Right-handed alpha
Helix 79	AI7	F	14	16	Right-handed 310
Helix 80	AI8	F	17	28	Right-handed alpha
Helix 81	AI9	F	94	104	Right-handed alpha
Helix 82	AJ1	F	104	116	Right-handed alpha
Helix 83	AJ2	F	116	121	Right-handed alpha
Helix 84	AJ3	F	121	126	Right-handed alpha
Helix 85	AJ4	F	133	161	Right-handed alpha
Helix 86	AJ5	F	176	202	Right-handed alpha
Helix 87	AJ6	F	204	209	Right-handed alpha
Helix 88	AJ7	G	7	12	Right-handed alpha
Helix 89	AJ8	G	13	29	Right-handed alpha
Helix 90	AJ9	G	94	104	Right-handed alpha
Helix 91	AK1	G	105	123	Right-handed alpha
Helix 92	AK2	G	124	126	Right-handed 310
Helix 93	AK3	G	131	136	Right-handed alpha
Helix 94	AK4	G	137	160	Right-handed alpha
Helix 95	AK5	G	176	209	Right-handed alpha
Helix 96	AK6	H	7	28	Right-handed alpha
Helix 97	AK7	H	94	104	Right-handed alpha
Helix 98	AK8	H	104	125	Right-handed alpha
Helix 99	AK9	H	131	161	Right-handed alpha
Helix 100	AL1	H	176	204	Right-handed alpha
Helix 101	AL2	H	205	209	Right-handed 310

There are 24 sheets in PDB entry 9DHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	705	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	720	723	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	682	683	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	701	705	anti-parallel
Strand 3	B	647	649	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	720	721	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	647	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	460	462	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	649	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	722	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	64	67	anti-parallel
Strand 3	E	56	60	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	174	175	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	64	68	anti-parallel
Strand 3	F	57	60	anti-parallel
Strand 4	F	33	36	anti-parallel
Strand 5	F	174	175	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	64	67	anti-parallel
Strand 3	G	57	60	anti-parallel
Strand 4	G	33	36	anti-parallel
Strand 5	G	174	175	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	37	first strand
Strand 2	H	56	60	anti-parallel
Strand 3	H	64	67	anti-parallel
Strand 4	H	76	78	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DHQ