Analysis of interatomic Contacts of Structural Units in PDB entry:
9DI0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DI0 entry

There are 3 chains in PDB entry 9DI0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 9	LEU 364
K	MET 1	ALA 430
L	MET 1	SER 439

There are 49 helices in PDB entry 9DI0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	118	126	Right-handed alpha
Helix 4	AA4	A	200	210	Right-handed alpha
Helix 5	AA5	A	279	295	Right-handed alpha
Helix 6	AA6	A	306	309	Right-handed 310
Helix 7	AA7	A	310	316	Right-handed alpha
Helix 8	AA8	A	316	321	Right-handed alpha
Helix 9	AA9	A	347	353	Right-handed alpha
Helix 10	AB1	K	10	28	Right-handed alpha
Helix 11	AB2	K	40	46	Right-handed alpha
Helix 12	AB3	K	47	49	Right-handed 310
Helix 13	AB4	K	70	79	Right-handed alpha
Helix 14	AB5	K	86	88	Right-handed 310
Helix 15	AB6	K	100	106	Right-handed alpha
Helix 16	AB7	K	108	126	Right-handed alpha
Helix 17	AB8	K	142	159	Right-handed alpha
Helix 18	AB9	K	180	196	Right-handed alpha
Helix 19	AC1	K	203	214	Right-handed alpha
Helix 20	AC2	K	221	237	Right-handed alpha
Helix 21	AC3	K	238	241	Right-handed 310
Helix 22	AC4	K	249	258	Right-handed alpha
Helix 23	AC5	K	285	294	Right-handed alpha
Helix 24	AC6	K	295	299	Right-handed 310
Helix 25	AC7	K	304	308	Right-handed 310
Helix 26	AC8	K	322	337	Right-handed alpha
Helix 27	AC9	K	338	341	Right-handed 310
Helix 28	AD1	K	374	391	Right-handed alpha
Helix 29	AD2	K	395	400	Right-handed alpha
Helix 30	AD3	K	404	425	Right-handed alpha
Helix 31	AD4	L	10	29	Right-handed alpha
Helix 32	AD5	L	71	81	Right-handed alpha
Helix 33	AD6	L	88	90	Right-handed 310
Helix 34	AD7	L	102	108	Right-handed alpha
Helix 35	AD8	L	110	113	Right-handed 310
Helix 36	AD9	L	114	129	Right-handed alpha
Helix 37	AE1	L	143	161	Right-handed alpha
Helix 38	AE2	L	182	195	Right-handed alpha
Helix 39	AE3	L	206	216	Right-handed alpha
Helix 40	AE4	L	223	244	Right-handed alpha
Helix 41	AE5	L	251	260	Right-handed alpha
Helix 42	AE6	L	277	282	Right-handed alpha
Helix 43	AE7	L	287	295	Right-handed alpha
Helix 44	AE8	L	296	301	Right-handed 310
Helix 45	AE9	L	306	310	Right-handed 310
Helix 46	AF1	L	324	338	Right-handed alpha
Helix 47	AF2	L	384	401	Right-handed alpha
Helix 48	AF3	L	404	410	Right-handed alpha
Helix 49	AF4	L	415	436	Right-handed alpha

There are 8 sheets in PDB entry 9DI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	13	18	parallel
Strand 3	A	327	332	parallel
Strand 4	A	108	111	parallel
Strand 5	A	253	258	parallel
Strand 6	A	229	237	anti-parallel
Strand 7	A	154	163	anti-parallel
Strand 8	A	166	169	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	72	74	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	188	190	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	92	first strand
Strand 2	K	63	67	parallel
Strand 3	K	2	9	parallel
Strand 4	K	129	138	parallel
Strand 5	K	163	169	parallel
Strand 6	K	198	202	parallel
Strand 7	K	265	271	parallel
Strand 8	K	363	371	anti-parallel
Strand 9	K	310	319	anti-parallel
Strand 10	K	349	354	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	54	first strand
Strand 2	K	58	61	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	92	94	first strand
Strand 2	L	65	69	parallel
Strand 3	L	4	9	parallel
Strand 4	L	134	140	parallel
Strand 5	L	165	172	parallel
Strand 6	L	202	205	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	56	first strand
Strand 2	L	60	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	269	273	first strand
Strand 2	L	373	381	anti-parallel
Strand 3	L	312	321	anti-parallel
Strand 4	L	351	355	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DI0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DI0