Analysis of interatomic Contacts of Structural Units in PDB entry:
9DI3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DI3 entry

There is 1 chain in PDB entry 9DI3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1385GLU 4091
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 9DI3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1399 1406Right-handed alpha
Helix 2
AA2
A
1436 1458Right-handed alpha
Helix 3
AA3
A
1474 1492Right-handed alpha
Helix 4
AA4
A
1506 1534Right-handed alpha
Helix 5
AA5
A
1535 1540Right-handed 310
Helix 6
AA6
A
1541 1551Right-handed alpha
Helix 7
AA7
A
1561 1566Right-handed alpha
Helix 8
AA8
A
1603 1633Right-handed alpha
Helix 9
AA9
A
1635 1641Right-handed alpha
Helix 10
AB1
A
1644 1666Right-handed alpha
Helix 11
AB2
A
1669 1688Right-handed alpha
Helix 12
AB3
A
1691 1717Right-handed alpha
Helix 13
AB4
A
1720 1731Right-handed alpha
Helix 14
AB5
A
1772 1788Right-handed alpha
Helix 15
AB6
A
1802 1814Right-handed alpha
Helix 16
AB7
A
1827 1842Right-handed alpha
Helix 17
AB8
A
1854 1875Right-handed alpha
Helix 18
AB9
A
1909 1914Right-handed alpha
Helix 19
AC1
A
1925 1937Right-handed alpha
Helix 20
AC2
A
1941 1960Right-handed alpha
Helix 21
AC3
A
1970 1987Right-handed alpha
Helix 22
AC4
A
1990 2002Right-handed alpha
Helix 23
AC5
A
2003 2006Right-handed 310
Helix 24
AC6
A
2008 2022Right-handed alpha
Helix 25
AC7
A
2032 2046Right-handed alpha
Helix 26
AC8
A
2050 2065Right-handed alpha
Helix 27
AC9
A
2080 2096Right-handed alpha
Helix 28
AD1
A
2110 2115Right-handed alpha
Helix 29
AD2
A
2128 2140Right-handed alpha
Helix 30
AD3
A
2144 2146Right-handed 310
Helix 31
AD4
A
2159 2164Right-handed alpha
Helix 32
AD5
A
2166 2171Right-handed alpha
Helix 33
AD6
A
2205 2210Right-handed alpha
Helix 34
AD7
A
2221 2237Right-handed alpha
Helix 35
AD8
A
2245 2257Right-handed alpha
Helix 36
AD9
A
2258 2271Right-handed alpha
Helix 37
AE1
A
2283 2299Right-handed alpha
Helix 38
AE2
A
2300 2305Right-handed 310
Helix 39
AE3
A
2306 2327Right-handed alpha
Helix 40
AE4
A
2331 2346Right-handed alpha
Helix 41
AE5
A
2370 2375Right-handed 310
Helix 42
AE6
A
2394 2410Right-handed alpha
Helix 43
AE7
A
2423 2434Right-handed alpha
Helix 44
AE8
A
2450 2460Right-handed alpha
Helix 45
AE9
A
2500 2512Right-handed alpha
Helix 46
AF1
A
2547 2552Right-handed alpha
Helix 47
AF2
A
2563 2580Right-handed alpha
Helix 48
AF3
A
2588 2606Right-handed alpha
Helix 49
AF4
A
2619 2635Right-handed alpha
Helix 50
AF5
A
2640 2656Right-handed alpha
Helix 51
AF6
A
2663 2680Right-handed alpha
Helix 52
AF7
A
2708 2727Right-handed alpha
Helix 53
AF8
A
2735 2751Right-handed alpha
Helix 54
AF9
A
2765 2777Right-handed alpha
Helix 55
AG1
A
2791 2810Right-handed alpha
Helix 56
AG2
A
2824 2837Right-handed alpha
Helix 57
AG3
A
2846 2860Right-handed alpha
Helix 58
AG4
A
2870 2884Right-handed alpha
Helix 59
AG5
A
2899 2903Right-handed 310
Helix 60
AG6
A
2921 2934Right-handed alpha
Helix 61
AG7
A
2961 2980Right-handed alpha
Helix 62
AG8
A
2989 3025Right-handed alpha
Helix 63
AG9
A
3299 3334Right-handed alpha
Helix 64
AH1
A
3338 3357Right-handed alpha
Helix 65
AH2
A
3365 3371Right-handed alpha
Helix 66
AH3
A
3372 3381Right-handed alpha
Helix 67
AH4
A
3387 3400Right-handed alpha
Helix 68
AH5
A
3412 3423Right-handed alpha
Helix 69
AH6
A
3436 3447Right-handed alpha
Helix 70
AH7
A
3454 3458Right-handed 310
Helix 71
AH8
A
3462 3467Right-handed alpha
Helix 72
AH9
A
3506 3512Right-handed alpha
Helix 73
AI1
A
3521 3537Right-handed alpha
Helix 74
AI2
A
3538 3573Right-handed alpha
Helix 75
AI3
A
3593 3605Right-handed alpha
Helix 76
AI4
A
3607 3618Right-handed alpha
Helix 77
AI5
A
3619 3639Right-handed alpha
Helix 78
AI6
A
3645 3659Right-handed alpha
Helix 79
AI7
A
3670 3687Right-handed alpha
Helix 80
AI8
A
3691 3708Right-handed alpha
Helix 81
AI9
A
3712 3727Right-handed alpha
Helix 82
AJ1
A
3742 3753Right-handed alpha
Helix 83
AJ2
A
3755 3768Right-handed alpha
Helix 84
AJ3
A
3773 3780Right-handed alpha
Helix 85
AJ4
A
3796 3808Right-handed alpha
Helix 86
AJ5
A
3818 3835Right-handed alpha
Helix 87
AJ6
A
3843 3846Right-handed 310
Helix 88
AJ7
A
3847 3860Right-handed alpha
Helix 89
AJ8
A
3885 3891Right-handed alpha
Helix 90
AJ9
A
3902 3914Right-handed alpha
Helix 91
AK1
A
3921 3943Right-handed alpha
Helix 92
AK2
A
3957 3975Right-handed alpha
Helix 93
AK3
A
3981 3992Right-handed alpha
Helix 94
AK4
A
4000 4015Right-handed alpha
Helix 95
AK5
A
4037 4051Right-handed alpha
Helix 96
AK6
A
4057 4061Right-handed 310
Helix 97
AK7
A
4066 4090Right-handed alpha
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There are 16 sheets in PDB entry 9DI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1386 1387first strand
Strand 2
A
1393 1394anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1569 1574first strand
Strand 2
A
1578 1584anti-parallel
Strand 3
A
1596 1597anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1733 1736first strand
Strand 2
A
1747 1751anti-parallel
Strand 3
A
1754 1757anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1878 1879first strand
Strand 2
A
1886 1887anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2098 2104first strand
Strand 2
A
2148 2155parallel
Strand 3
A
2191 2196parallel
Strand 4
A
2069 2074parallel
Strand 5
A
2211 2215parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2438 2444first strand
Strand 2
A
2481 2487parallel
Strand 3
A
2530 2535parallel
Strand 4
A
2414 2417parallel
Strand 5
A
2555 2558parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2462 2465first strand
Strand 2
A
2472 2475anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2514 2516first strand
Strand 2
A
2523 2525anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2696 2697first strand
Strand 2
A
2705 2706anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2888 2891first strand
Strand 2
A
2756 2759parallel
Strand 3
A
2914 2915parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2780 2782first strand
Strand 2
A
2813 2815parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3426 3430first strand
Strand 2
A
3449 3453parallel
Strand 3
A
3494 3498parallel
Strand 4
A
3404 3408parallel
Strand 5
A
3513 3514parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3478 3481first strand
Strand 2
A
3484 3487anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3811 3813first strand
Strand 2
A
3837 3840parallel
Strand 3
A
3871 3874parallel
Strand 4
A
3785 3790parallel
Strand 5
A
3877 3878parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3811 3813first strand
Strand 2
A
3837 3840parallel
Strand 3
A
3871 3874parallel
Strand 4
A
3785 3790parallel
Strand 5
A
3893 3896parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4021 4024first strand
Strand 2
A
4027 4029anti-parallel
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