Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DIA entry

There are 3 chains in PDB entry 9DIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ARG 449
B	GLY 65	ILE 441
C	GLU 2	ARG 64

There are 17 helices in PDB entry 9DIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	86	Right-handed alpha
Helix 2	AA2	A	184	189	Right-handed alpha
Helix 3	AA3	A	196	203	Right-handed alpha
Helix 4	AA4	A	223	227	Right-handed 310
Helix 5	AA5	B	135	141	Right-handed alpha
Helix 6	AA6	B	144	154	Right-handed alpha
Helix 7	AA7	B	179	185	Right-handed alpha
Helix 8	AA8	B	208	218	Right-handed alpha
Helix 9	AA9	B	231	242	Right-handed alpha
Helix 10	AB1	B	266	272	Right-handed 310
Helix 11	AB2	B	298	310	Right-handed alpha
Helix 12	AB3	B	321	332	Right-handed alpha
Helix 13	AB4	B	346	360	Right-handed alpha
Helix 14	AB5	B	388	392	Right-handed 310
Helix 15	AB6	C	13	15	Right-handed 310
Helix 16	AB7	C	16	26	Right-handed alpha
Helix 17	AB8	C	43	58	Right-handed alpha

There are 14 sheets in PDB entry 9DIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	432	437	anti-parallel
Strand 4	A	419	421	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	68	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	120	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	217	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	247	252	anti-parallel
Strand 3	A	261	265	anti-parallel
Strand 4	A	272	277	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	340	343	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	318	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	98	102	anti-parallel
Strand 3	B	434	438	parallel
Strand 4	B	422	427	anti-parallel
Strand 5	B	361	366	anti-parallel
Strand 6	B	394	396	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	116	first strand
Strand 2	B	403	412	anti-parallel
Strand 3	B	373	380	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	206	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	123	130	parallel
Strand 4	B	251	258	parallel
Strand 5	B	311	317	parallel
Strand 6	B	335	339	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	C	29	33	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIA