Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DIH entry

There are 2 chains in PDB entry 9DIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13PRO 382
B
 ALA 10SER 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9DIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
79 81Right-handed 310
Helix 4
AA4
A
87 97Right-handed alpha
Helix 5
AA5
A
102 123Right-handed alpha
Helix 6
AA6
A
146 157Right-handed alpha
Helix 7
AA7
A
179 192Right-handed alpha
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
202 205Right-handed 310
Helix 10
AB1
A
218 230Right-handed alpha
Helix 11
AB2
A
281 289Right-handed alpha
Helix 12
AB3
A
309 331Right-handed alpha
Helix 13
AB4
A
342 352Right-handed alpha
Helix 14
AB5
A
368 371Right-handed 310
Helix 15
AB6
B
17 28Right-handed alpha
Helix 16
AB7
B
40 45Right-handed alpha
Helix 17
AB8
B
72 78Right-handed alpha
Helix 18
AB9
B
79 81Right-handed 310
Helix 19
AC1
B
87 93Right-handed alpha
Helix 20
AC2
B
106 122Right-handed alpha
Helix 21
AC3
B
123 126Right-handed 310
Helix 22
AC4
B
137 143Right-handed alpha
Helix 23
AC5
B
146 157Right-handed alpha
Helix 24
AC6
B
179 199Right-handed alpha
Helix 25
AC7
B
218 230Right-handed alpha
Helix 26
AC8
B
281 289Right-handed alpha
Helix 27
AC9
B
309 331Right-handed alpha
Helix 28
AD1
B
342 353Right-handed alpha
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There are 8 sheets in PDB entry 9DIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
47 48anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
83 86anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
129 135parallel
Strand 3
A
210 216parallel
Strand 4
A
235 237parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
293 298anti-parallel
Strand 3
A
270 275parallel
Strand 4
A
335 340parallel
Strand 5
A
361 366parallel
Strand 6
A
374 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
83 86anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
128 136parallel
Strand 3
B
166 170parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
128 136parallel
Strand 3
B
210 216parallel
Strand 4
B
235 237parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
293 298anti-parallel
Strand 3
B
270 275parallel
Strand 4
B
335 340parallel
Strand 5
B
361 366parallel
Strand 6
B
374 380anti-parallel
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