Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DIS entry

There are 2 chains in PDB entry 9DIS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ALA 114
B	GLU 10	TRP 640

There are 11 helices in PDB entry 9DIS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	27	Right-handed alpha
Helix 2	AA2	A	31	48	Right-handed alpha
Helix 3	AA3	A	48	67	Right-handed alpha
Helix 4	AA4	A	69	90	Right-handed alpha
Helix 5	AA5	A	92	113	Right-handed alpha
Helix 6	AA6	B	46	51	Right-handed 310
Helix 7	AA7	B	101	103	Right-handed 310
Helix 8	AA8	B	115	120	Right-handed alpha
Helix 9	AA9	B	134	139	Right-handed alpha
Helix 10	AB1	B	418	424	Right-handed alpha
Helix 11	AB2	B	599	603	Right-handed 310

There are 5 sheets in PDB entry 9DIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	21	22	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	105	112	anti-parallel
Strand 3	B	126	132	anti-parallel
Strand 4	B	80	83	parallel
Strand 5	B	86	87	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	69	71	anti-parallel

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There are 25 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	431	first strand
Strand 2	B	435	439	anti-parallel
Strand 3	B	496	517	parallel
Strand 4	B	522	533	anti-parallel
Strand 5	B	545	556	anti-parallel
Strand 6	B	562	571	anti-parallel
Strand 7	B	587	597	anti-parallel
Strand 8	B	605	612	anti-parallel
Strand 9	B	631	639	anti-parallel
Strand 10	B	145	154	anti-parallel
Strand 11	B	159	169	anti-parallel
Strand 12	B	173	184	anti-parallel
Strand 13	B	198	211	anti-parallel
Strand 14	B	216	232	anti-parallel
Strand 15	B	247	263	anti-parallel
Strand 16	B	272	287	anti-parallel
Strand 17	B	294	311	anti-parallel
Strand 18	B	317	336	anti-parallel
Strand 19	B	344	359	anti-parallel
Strand 20	B	364	379	anti-parallel
Strand 21	B	382	398	anti-parallel
Strand 22	B	404	415	anti-parallel
Strand 23	B	448	462	anti-parallel
Strand 24	B	470	491	anti-parallel
Strand 25	B	496	517	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DIS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIS