Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DIX entry

There are 6 chains in PDB entry 9DIX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 74	VAL 707
B	PHE 33	HIS 253
C	ASP 226	GLN 312
D	GLU 74	VAL 707
E	PHE 33	HIS 253
F	ASP 226	GLN 312

There are 68 helices in PDB entry 9DIX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	99	Right-handed 310
Helix 2	AA2	A	100	108	Right-handed alpha
Helix 3	AA3	A	115	125	Right-handed alpha
Helix 4	AA4	A	128	133	Right-handed alpha
Helix 5	AA5	A	264	267	Right-handed 310
Helix 6	AA6	A	283	289	Right-handed 310
Helix 7	AA7	A	290	295	Right-handed 310
Helix 8	AA8	A	299	304	Right-handed alpha
Helix 9	AA9	A	309	317	Right-handed alpha
Helix 10	AB1	A	317	329	Right-handed alpha
Helix 11	AB2	A	335	354	Right-handed alpha
Helix 12	AB3	A	363	386	Right-handed alpha
Helix 13	AB4	A	400	410	Right-handed alpha
Helix 14	AB5	A	416	430	Right-handed alpha
Helix 15	AB6	A	432	436	Right-handed 310
Helix 16	AB7	A	437	455	Right-handed alpha
Helix 17	AB8	A	461	476	Right-handed alpha
Helix 18	AB9	A	481	495	Right-handed alpha
Helix 19	AC1	A	497	509	Right-handed alpha
Helix 20	AC2	A	516	520	Right-handed 310
Helix 21	AC3	A	521	526	Right-handed alpha
Helix 22	AC4	A	532	539	Right-handed alpha
Helix 23	AC5	A	547	559	Right-handed alpha
Helix 24	AC6	A	645	649	Right-handed 310
Helix 25	AC7	A	672	681	Right-handed alpha
Helix 26	AC8	A	682	685	Right-handed 310
Helix 27	AC9	B	46	51	Right-handed alpha
Helix 28	AD1	B	107	110	Right-handed 310
Helix 29	AD2	B	191	193	Right-handed 310
Helix 30	AD3	B	234	239	Right-handed alpha
Helix 31	AD4	C	232	236	Right-handed 310
Helix 32	AD5	C	273	289	Right-handed alpha
Helix 33	AD6	C	294	302	Right-handed alpha
Helix 34	AD7	C	303	305	Right-handed 310
Helix 35	AD8	D	94	99	Right-handed 310
Helix 36	AD9	D	101	108	Right-handed alpha
Helix 37	AE1	D	115	124	Right-handed alpha
Helix 38	AE2	D	128	133	Right-handed alpha
Helix 39	AE3	D	264	267	Right-handed 310
Helix 40	AE4	D	283	289	Right-handed 310
Helix 41	AE5	D	290	295	Right-handed 310
Helix 42	AE6	D	299	304	Right-handed alpha
Helix 43	AE7	D	309	317	Right-handed alpha
Helix 44	AE8	D	317	329	Right-handed alpha
Helix 45	AE9	D	335	354	Right-handed alpha
Helix 46	AF1	D	363	386	Right-handed alpha
Helix 47	AF2	D	400	410	Right-handed alpha
Helix 48	AF3	D	416	430	Right-handed alpha
Helix 49	AF4	D	432	436	Right-handed 310
Helix 50	AF5	D	437	455	Right-handed alpha
Helix 51	AF6	D	461	475	Right-handed alpha
Helix 52	AF7	D	476	478	Right-handed 310
Helix 53	AF8	D	481	495	Right-handed alpha
Helix 54	AF9	D	497	509	Right-handed alpha
Helix 55	AG1	D	516	520	Right-handed 310
Helix 56	AG2	D	521	526	Right-handed alpha
Helix 57	AG3	D	532	539	Right-handed alpha
Helix 58	AG4	D	547	559	Right-handed alpha
Helix 59	AG5	D	645	649	Right-handed 310
Helix 60	AG6	D	672	681	Right-handed alpha
Helix 61	AG7	D	682	685	Right-handed 310
Helix 62	AG8	E	46	51	Right-handed alpha
Helix 63	AG9	E	191	193	Right-handed 310
Helix 64	AH1	E	218	222	Right-handed 310
Helix 65	AH2	E	234	239	Right-handed alpha
Helix 66	AH3	F	273	288	Right-handed alpha
Helix 67	AH4	F	294	302	Right-handed alpha
Helix 68	AH5	F	303	305	Right-handed 310

There are 17 sheets in PDB entry 9DIX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	C	244	249	parallel
Strand 4	C	259	265	anti-parallel
Strand 5	C	268	272	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	269	272	parallel
Strand 3	A	277	281	anti-parallel
Strand 4	A	247	252	anti-parallel
Strand 5	A	234	241	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	213	218	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	198	first strand
Strand 2	A	208	211	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	588	593	anti-parallel
Strand 3	A	615	620	anti-parallel
Strand 4	A	601	604	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	639	first strand
Strand 2	A	704	706	parallel
Strand 3	A	693	698	anti-parallel
Strand 4	A	653	659	anti-parallel
Strand 5	A	665	670	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	151	160	parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	76	83	anti-parallel
Strand 5	B	91	96	anti-parallel
Strand 6	B	102	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	126	130	anti-parallel
Strand 3	B	115	119	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	167	first strand
Strand 2	B	206	213	anti-parallel
Strand 3	B	195	203	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	93	first strand
Strand 2	D	77	80	anti-parallel
Strand 3	F	244	249	parallel
Strand 4	F	259	264	anti-parallel
Strand 5	F	270	272	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	269	272	parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	247	252	anti-parallel
Strand 5	D	234	241	anti-parallel
Strand 6	D	224	230	anti-parallel
Strand 7	D	213	218	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	198	first strand
Strand 2	D	208	211	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	579	582	first strand
Strand 2	D	588	593	anti-parallel
Strand 3	D	612	620	anti-parallel
Strand 4	D	601	609	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	638	639	first strand
Strand 2	D	704	706	parallel
Strand 3	D	693	698	anti-parallel
Strand 4	D	653	659	anti-parallel
Strand 5	D	665	670	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	151	160	parallel
Strand 3	E	139	146	anti-parallel
Strand 4	E	76	83	anti-parallel
Strand 5	E	91	96	anti-parallel
Strand 6	E	102	105	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	124	130	anti-parallel
Strand 3	E	69	70	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	124	130	anti-parallel
Strand 3	E	115	121	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	206	213	anti-parallel
Strand 3	E	195	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DIX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIX