Analysis of interatomic Contacts of Structural Units in PDB entry:
9DIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DIY entry

There are 3 chains in PDB entry 9DIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38ASP 309
C
 TRP 203LEU 308
B
 PHE 33HIS 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9DIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 65Right-handed 310
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
94 99Right-handed alpha
Helix 4
AA4
A
100 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
115 124Right-handed alpha
Helix 7
AA7
A
128 134Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
283 289Right-handed 310
Helix 10
AB1
A
291 295Right-handed 310
Helix 11
AB2
C
218 222Right-handed 310
Helix 12
AB3
C
232 236Right-handed 310
Helix 13
AB4
C
238 242Right-handed 310
Helix 14
AB5
C
274 289Right-handed alpha
Helix 15
AB6
C
290 295Right-handed 310
Helix 16
AB7
C
296 302Right-handed alpha
Helix 17
AB8
C
303 305Right-handed 310
Helix 18
AB9
B
46 51Right-handed alpha
Helix 19
AC1
B
134 137Right-handed 310
Helix 20
AC2
B
191 193Right-handed 310
Helix 21
AC3
B
234 239Right-handed alpha
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There are 6 sheets in PDB entry 9DIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
C
244 248parallel
Strand 5
C
260 264anti-parallel
Strand 6
C
269 272anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
208 211anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
226 231anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
247 252anti-parallel
Strand 5
A
277 281anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
151 160parallel
Strand 3
B
139 146anti-parallel
Strand 4
B
76 83anti-parallel
Strand 5
B
91 96anti-parallel
Strand 6
B
102 105anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
115 119anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 167first strand
Strand 2
B
206 213anti-parallel
Strand 3
B
195 203anti-parallel
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