Analysis of interatomic Contacts of Structural Units in PDB entry:
9DJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DJU entry

There are 2 chains in PDB entry 9DJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1370	GLU 4091
C	VAL 139	ARG 494

There are105 helices in PDB entry 9DJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1370	1380	Right-handed alpha
Helix 2	AA2	A	1397	1406	Right-handed alpha
Helix 3	AA3	A	1426	1458	Right-handed alpha
Helix 4	AA4	A	1459	1462	Right-handed 310
Helix 5	AA5	A	1474	1492	Right-handed alpha
Helix 6	AA6	A	1506	1534	Right-handed alpha
Helix 7	AA7	A	1535	1540	Right-handed 310
Helix 8	AA8	A	1541	1551	Right-handed alpha
Helix 9	AA9	A	1561	1566	Right-handed alpha
Helix 10	AB1	A	1603	1632	Right-handed alpha
Helix 11	AB2	A	1635	1641	Right-handed alpha
Helix 12	AB3	A	1644	1665	Right-handed alpha
Helix 13	AB4	A	1669	1688	Right-handed alpha
Helix 14	AB5	A	1691	1717	Right-handed alpha
Helix 15	AB6	A	1720	1730	Right-handed alpha
Helix 16	AB7	A	1772	1788	Right-handed alpha
Helix 17	AB8	A	1802	1814	Right-handed alpha
Helix 18	AB9	A	1827	1842	Right-handed alpha
Helix 19	AC1	A	1849	1853	Right-handed 310
Helix 20	AC2	A	1854	1875	Right-handed alpha
Helix 21	AC3	A	1909	1915	Right-handed alpha
Helix 22	AC4	A	1925	1938	Right-handed alpha
Helix 23	AC5	A	1941	1960	Right-handed alpha
Helix 24	AC6	A	1970	1988	Right-handed alpha
Helix 25	AC7	A	1990	2002	Right-handed alpha
Helix 26	AC8	A	2003	2006	Right-handed 310
Helix 27	AC9	A	2008	2022	Right-handed alpha
Helix 28	AD1	A	2032	2046	Right-handed alpha
Helix 29	AD2	A	2050	2065	Right-handed alpha
Helix 30	AD3	A	2079	2096	Right-handed alpha
Helix 31	AD4	A	2110	2115	Right-handed alpha
Helix 32	AD5	A	2128	2140	Right-handed alpha
Helix 33	AD6	A	2143	2146	Right-handed 310
Helix 34	AD7	A	2160	2165	Right-handed alpha
Helix 35	AD8	A	2166	2171	Right-handed alpha
Helix 36	AD9	A	2205	2210	Right-handed alpha
Helix 37	AE1	A	2221	2237	Right-handed alpha
Helix 38	AE2	A	2245	2257	Right-handed alpha
Helix 39	AE3	A	2258	2270	Right-handed alpha
Helix 40	AE4	A	2279	2282	Right-handed 310
Helix 41	AE5	A	2283	2299	Right-handed alpha
Helix 42	AE6	A	2300	2305	Right-handed 310
Helix 43	AE7	A	2306	2327	Right-handed alpha
Helix 44	AE8	A	2331	2345	Right-handed alpha
Helix 45	AE9	A	2372	2374	Right-handed 310
Helix 46	AF1	A	2381	2385	Right-handed 310
Helix 47	AF2	A	2394	2410	Right-handed alpha
Helix 48	AF3	A	2423	2434	Right-handed alpha
Helix 49	AF4	A	2451	2460	Right-handed alpha
Helix 50	AF5	A	2501	2513	Right-handed alpha
Helix 51	AF6	A	2547	2552	Right-handed alpha
Helix 52	AF7	A	2563	2580	Right-handed alpha
Helix 53	AF8	A	2582	2587	Right-handed 310
Helix 54	AF9	A	2588	2607	Right-handed alpha
Helix 55	AG1	A	2618	2635	Right-handed alpha
Helix 56	AG2	A	2640	2656	Right-handed alpha
Helix 57	AG3	A	2663	2680	Right-handed alpha
Helix 58	AG4	A	2708	2727	Right-handed alpha
Helix 59	AG5	A	2735	2751	Right-handed alpha
Helix 60	AG6	A	2765	2778	Right-handed alpha
Helix 61	AG7	A	2791	2810	Right-handed alpha
Helix 62	AG8	A	2824	2837	Right-handed alpha
Helix 63	AG9	A	2846	2860	Right-handed alpha
Helix 64	AH1	A	2870	2884	Right-handed alpha
Helix 65	AH2	A	2899	2905	Right-handed alpha
Helix 66	AH3	A	2921	2933	Right-handed alpha
Helix 67	AH4	A	2934	2936	Right-handed 310
Helix 68	AH5	A	2961	2980	Right-handed alpha
Helix 69	AH6	A	2989	3025	Right-handed alpha
Helix 70	AH7	A	3299	3334	Right-handed alpha
Helix 71	AH8	A	3338	3357	Right-handed alpha
Helix 72	AH9	A	3366	3371	Right-handed alpha
Helix 73	AI1	A	3372	3381	Right-handed alpha
Helix 74	AI2	A	3387	3400	Right-handed alpha
Helix 75	AI3	A	3413	3423	Right-handed alpha
Helix 76	AI4	A	3436	3447	Right-handed alpha
Helix 77	AI5	A	3454	3458	Right-handed 310
Helix 78	AI6	A	3462	3468	Right-handed alpha
Helix 79	AI7	A	3506	3513	Right-handed alpha
Helix 80	AI8	A	3521	3537	Right-handed alpha
Helix 81	AI9	A	3539	3572	Right-handed alpha
Helix 82	AJ1	A	3583	3604	Right-handed alpha
Helix 83	AJ2	A	3607	3618	Right-handed alpha
Helix 84	AJ3	A	3619	3635	Right-handed alpha
Helix 85	AJ4	A	3645	3659	Right-handed alpha
Helix 86	AJ5	A	3670	3687	Right-handed alpha
Helix 87	AJ6	A	3691	3710	Right-handed alpha
Helix 88	AJ7	A	3712	3727	Right-handed alpha
Helix 89	AJ8	A	3742	3753	Right-handed alpha
Helix 90	AJ9	A	3756	3768	Right-handed alpha
Helix 91	AK1	A	3773	3780	Right-handed alpha
Helix 92	AK2	A	3796	3808	Right-handed alpha
Helix 93	AK3	A	3818	3835	Right-handed alpha
Helix 94	AK4	A	3843	3846	Right-handed 310
Helix 95	AK5	A	3847	3860	Right-handed alpha
Helix 96	AK6	A	3885	3890	Right-handed alpha
Helix 97	AK7	A	3902	3914	Right-handed alpha
Helix 98	AK8	A	3923	3945	Right-handed alpha
Helix 99	AK9	A	3957	3975	Right-handed alpha
Helix 100	AL1	A	3981	3992	Right-handed alpha
Helix 101	AL2	A	4000	4015	Right-handed alpha
Helix 102	AL3	A	4037	4051	Right-handed alpha
Helix 103	AL4	A	4057	4062	Right-handed alpha
Helix 104	AL5	A	4066	4089	Right-handed alpha
Helix 105	AL6	C	362	369	Right-handed alpha

There are 22 sheets in PDB entry 9DJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1571	1575	first strand
Strand 2	A	1578	1583	anti-parallel
Strand 3	A	1589	1597	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1750	anti-parallel
Strand 3	A	1756	1757	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1821	first strand
Strand 2	A	1845	1848	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2098	2104	first strand
Strand 2	A	2148	2154	parallel
Strand 3	A	2190	2194	parallel
Strand 4	A	2069	2073	parallel
Strand 5	A	2211	2214	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2357	2360	first strand
Strand 2	A	2367	2370	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2441	2444	first strand
Strand 2	A	2482	2487	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2413	2417	parallel
Strand 5	A	2554	2558	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2462	2465	first strand
Strand 2	A	2472	2475	anti-parallel
Strand 3	A	2523	2526	parallel
Strand 4	A	2514	2516	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2696	2697	first strand
Strand 2	A	2705	2706	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2780	2782	first strand
Strand 2	A	2813	2817	parallel
Strand 3	A	2885	2890	parallel
Strand 4	A	2756	2760	parallel
Strand 5	A	2913	2918	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3426	3430	first strand
Strand 2	A	3449	3453	parallel
Strand 3	A	3494	3498	parallel
Strand 4	A	3405	3408	parallel
Strand 5	A	3514	3517	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3815	first strand
Strand 2	A	3837	3842	parallel
Strand 3	A	3871	3874	parallel
Strand 4	A	3785	3790	parallel
Strand 5	A	3877	3878	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3815	first strand
Strand 2	A	3837	3842	parallel
Strand 3	A	3871	3874	parallel
Strand 4	A	3785	3790	parallel
Strand 5	A	3894	3896	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4020	4021	first strand
Strand 2	A	4029	4030	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	488	492	anti-parallel
Strand 3	C	480	484	anti-parallel
Strand 4	C	461	466	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	163	first strand
Strand 2	C	169	174	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	192	195	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	220	226	anti-parallel
Strand 3	C	230	236	anti-parallel
Strand 4	C	243	249	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	260	first strand
Strand 2	C	271	274	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	289	293	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	319	323	anti-parallel
Strand 4	C	329	333	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	346	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	382	386	anti-parallel
Strand 4	C	408	413	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	429	434	anti-parallel
Strand 3	C	438	443	anti-parallel
Strand 4	C	449	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DJU