Analysis of interatomic Contacts of Structural Units in PDB entry:
9DK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DK3 entry

There are 2 chains in PDB entry 9DK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 23ALA 385
B
 ALA 13ASP 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9DK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 33Right-handed alpha
Helix 2
AA2
A
77 92Right-handed alpha
Helix 3
AA3
A
125 132Right-handed alpha
Helix 4
AA4
A
135 152Right-handed alpha
Helix 5
AA5
A
167 173Right-handed alpha
Helix 6
AA6
A
176 180Right-handed alpha
Helix 7
AA7
A
183 195Right-handed alpha
Helix 8
AA8
A
196 209Right-handed alpha
Helix 9
AA9
A
210 213Right-handed 310
Helix 10
AB1
A
223 225Right-handed 310
Helix 11
AB2
A
231 234Right-handed 310
Helix 12
AB3
A
250 267Right-handed alpha
Helix 13
AB4
A
268 271Right-handed 310
Helix 14
AB5
A
290 320Right-handed alpha
Helix 15
AB6
A
322 327Right-handed alpha
Helix 16
AB7
A
329 350Right-handed alpha
Helix 17
AB8
A
351 353Right-handed 310
Helix 18
AB9
A
357 373Right-handed alpha
Helix 19
AC1
A
373 382Right-handed alpha
Helix 20
AC2
B
14 19Right-handed alpha
Helix 21
AC3
B
23 30Right-handed alpha
Helix 22
AC4
B
53 70Right-handed alpha
Helix 23
AC5
B
91 102Right-handed alpha
Helix 24
AC6
B
194 212Right-handed alpha
Helix 25
AC7
B
241 254Right-handed alpha
Helix 26
AC8
B
292 310Right-handed alpha
Helix 27
AC9
B
345 357Right-handed alpha
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There are 7 sheets in PDB entry 9DK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
62 67anti-parallel
Strand 4
A
113 117anti-parallel
Strand 5
A
104 108anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
227 229anti-parallel
Strand 3
A
237 239anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
B
133 137parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
106 117anti-parallel
Strand 5
B
153 159anti-parallel
Strand 6
B
141 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
246 248anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
41 44anti-parallel
Strand 3
B
47 50anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
169 173anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
233 238anti-parallel
Strand 5
B
186 190anti-parallel
Strand 6
B
275 279anti-parallel
Strand 7
B
269 272anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
363 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il