Analysis of interatomic Contacts of Structural Units in PDB entry:
9DK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DK5 entry

There are 5 chains in PDB entry 9DK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ALA 1772
C
 GLY 20ALA 192
H
 ASP 1ILE 34
I
 ASP 1ILE 34
J
 ASP 1ILE 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 9DK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 35Right-handed alpha
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
119 130Right-handed alpha
Helix 5
AA5
A
131 149Right-handed alpha
Helix 6
AA6
A
157 180Right-handed alpha
Helix 7
AA7
A
188 191Right-handed 310
Helix 8
AA8
A
192 212Right-handed alpha
Helix 9
AA9
A
215 220Right-handed alpha
Helix 10
AB1
A
221 223Right-handed 310
Helix 11
AB2
A
224 234Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
A
248 250Right-handed 310
Helix 14
AB5
A
251 273Right-handed alpha
Helix 15
AB6
A
275 277Right-handed 310
Helix 16
AB7
A
301 306Right-handed alpha
Helix 17
AB8
A
308 312Right-handed 310
Helix 18
AB9
A
346 350Right-handed 310
Helix 19
AC1
A
355 369Right-handed alpha
Helix 20
AC2
A
371 384Right-handed alpha
Helix 21
AC3
A
387 414Right-handed alpha
Helix 22
AC4
A
738 750Right-handed alpha
Helix 23
AC5
A
752 771Right-handed alpha
Helix 24
AC6
A
778 807Right-handed alpha
Helix 25
AC7
A
815 834Right-handed alpha
Helix 26
AC8
A
834 839Right-handed alpha
Helix 27
AC9
A
840 857Right-handed 310
Helix 28
AD1
A
858 873Right-handed alpha
Helix 29
AD2
A
875 898Right-handed alpha
Helix 30
AD3
A
899 904Right-handed alpha
Helix 31
AD4
A
904 909Right-handed alpha
Helix 32
AD5
A
921 934Right-handed alpha
Helix 33
AD6
A
937 949Right-handed alpha
Helix 34
AD7
A
949 980Right-handed alpha
Helix 35
AD8
A
997 1007Right-handed alpha
Helix 36
AD9
A
1178 1197Right-handed alpha
Helix 37
AE1
A
1197 1214Right-handed alpha
Helix 38
AE2
A
1215 1218Right-handed 310
Helix 39
AE3
A
1221 1224Right-handed 310
Helix 40
AE4
A
1225 1255Right-handed alpha
Helix 41
AE5
A
1255 1260Right-handed alpha
Helix 42
AE6
A
1262 1285Right-handed alpha
Helix 43
AE7
A
1289 1297Right-handed alpha
Helix 44
AE8
A
1298 1307Right-handed 310
Helix 45
AE9
A
1310 1323Right-handed alpha
Helix 46
AF1
A
1323 1350Right-handed alpha
Helix 47
AF2
A
1372 1380Right-handed alpha
Helix 48
AF3
A
1398 1411Right-handed alpha
Helix 49
AF4
A
1414 1425Right-handed alpha
Helix 50
AF5
A
1437 1439Right-handed 310
Helix 51
AF6
A
1440 1452Right-handed alpha
Helix 52
AF7
A
1452 1475Right-handed alpha
Helix 53
AF8
A
1482 1496Right-handed alpha
Helix 54
AF9
A
1509 1520Right-handed alpha
Helix 55
AG1
A
1521 1541Right-handed alpha
Helix 56
AG2
A
1547 1576Right-handed alpha
Helix 57
AG3
A
1579 1582Right-handed 310
Helix 58
AG4
A
1583 1607Right-handed alpha
Helix 59
AG5
A
1612 1621Right-handed alpha
Helix 60
AG6
A
1623 1628Right-handed alpha
Helix 61
AG7
A
1629 1634Right-handed alpha
Helix 62
AG8
A
1634 1673Right-handed alpha
Helix 63
AG9
A
1690 1703Right-handed alpha
Helix 64
AH1
A
1706 1715Right-handed alpha
Helix 65
AH2
A
1738 1772Right-handed alpha
Helix 66
AH3
C
112 115Right-handed 310
Helix 67
AH4
C
153 192Right-handed alpha
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There are 8 sheets in PDB entry 9DK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
103 107anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
337 341anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1363 1364first strand
Strand 2
A
1354 1358anti-parallel
Strand 3
A
1387 1391anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
138 147parallel
Strand 3
C
117 129anti-parallel
Strand 4
C
51 61anti-parallel
Strand 5
C
68 74anti-parallel
Strand 6
C
77 80anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
138 147parallel
Strand 3
C
117 129anti-parallel
Strand 4
C
132 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
106 108anti-parallel
Strand 3
C
90 92anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 23first strand
Strand 2
H
30 31anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
21 22first strand
Strand 2
I
31 32anti-parallel
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