Analysis of interatomic Contacts of Structural Units in PDB entry:
9DK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DK8 entry

There are 6 chains in PDB entry 9DK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LYS 393ALA 535
B
 LYS 393ALA 535
F
 LYS 393ALA 535
D
 LYS 393ALA 535
A
 LYS 393ALA 535
C
 LYS 393ALA 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9DK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
405 420Right-handed alpha
Helix 2
AA2
E
439 448Right-handed alpha
Helix 3
AA3
E
457 461Right-handed 310
Helix 4
AA4
E
462 479Right-handed alpha
Helix 5
AA5
E
495 499Right-handed 310
Helix 6
AA6
E
503 508Right-handed 310
Helix 7
AA7
E
519 528Right-handed alpha
Helix 8
AA8
B
405 419Right-handed alpha
Helix 9
AA9
B
426 431Right-handed 310
Helix 10
AB1
B
438 448Right-handed alpha
Helix 11
AB2
B
462 479Right-handed alpha
Helix 12
AB3
B
495 499Right-handed 310
Helix 13
AB4
B
500 507Right-handed alpha
Helix 14
AB5
B
519 528Right-handed alpha
Helix 15
AB6
F
405 419Right-handed alpha
Helix 16
AB7
F
442 448Right-handed alpha
Helix 17
AB8
F
457 461Right-handed 310
Helix 18
AB9
F
462 479Right-handed alpha
Helix 19
AC1
F
495 499Right-handed 310
Helix 20
AC2
F
500 505Right-handed alpha
Helix 21
AC3
F
506 508Right-handed 310
Helix 22
AC4
F
519 528Right-handed alpha
Helix 23
AC5
D
405 419Right-handed alpha
Helix 24
AC6
D
426 430Right-handed 310
Helix 25
AC7
D
440 448Right-handed alpha
Helix 26
AC8
D
457 461Right-handed 310
Helix 27
AC9
D
462 479Right-handed alpha
Helix 28
AD1
D
495 499Right-handed 310
Helix 29
AD2
D
500 505Right-handed alpha
Helix 30
AD3
D
506 510Right-handed 310
Helix 31
AD4
D
519 528Right-handed alpha
Helix 32
AD5
A
405 420Right-handed alpha
Helix 33
AD6
A
426 430Right-handed 310
Helix 34
AD7
A
437 448Right-handed alpha
Helix 35
AD8
A
462 479Right-handed alpha
Helix 36
AD9
A
500 505Right-handed alpha
Helix 37
AE1
A
519 528Right-handed alpha
Helix 38
AE2
C
405 419Right-handed alpha
Helix 39
AE3
C
441 448Right-handed alpha
Helix 40
AE4
C
457 461Right-handed 310
Helix 41
AE5
C
462 479Right-handed alpha
Helix 42
AE6
C
495 499Right-handed 310
Helix 43
AE7
C
500 505Right-handed alpha
Helix 44
AE8
C
519 528Right-handed alpha
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There are 6 sheets in PDB entry 9DK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
395 400first strand
Strand 2
E
449 455parallel
Strand 3
E
486 490parallel
Strand 4
E
513 514parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 400first strand
Strand 2
B
449 455parallel
Strand 3
B
486 490parallel
Strand 4
B
513 514parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
395 400first strand
Strand 2
F
449 455parallel
Strand 3
F
486 490parallel
Strand 4
F
513 514parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
395 400first strand
Strand 2
D
449 455parallel
Strand 3
D
486 490parallel
Strand 4
D
513 514parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 400first strand
Strand 2
A
449 455parallel
Strand 3
A
486 490parallel
Strand 4
A
513 514parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 400first strand
Strand 2
C
449 455parallel
Strand 3
C
487 490parallel
Strand 4
C
513 514parallel
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