Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DKA entry

There is 1 chain in PDB entry 9DKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 518
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9DKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
14 37Right-handed alpha
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
51 56Right-handed alpha
Helix 5
AA5
A
56 63Right-handed alpha
Helix 6
AA6
A
68 74Right-handed alpha
Helix 7
AA7
A
109 111Right-handed 310
Helix 8
AA8
A
130 136Right-handed alpha
Helix 9
AA9
A
138 142Right-handed 310
Helix 10
AB1
A
143 171Right-handed alpha
Helix 11
AB2
A
171 192Right-handed alpha
Helix 12
AB3
A
195 224Right-handed alpha
Helix 13
AB4
A
229 253Right-handed alpha
Helix 14
AB5
A
257 267Right-handed alpha
Helix 15
AB6
A
267 276Right-handed alpha
Helix 16
AB7
A
282 290Right-handed alpha
Helix 17
AB8
A
291 307Right-handed alpha
Helix 18
AB9
A
308 315Right-handed alpha
Helix 19
AC1
A
316 324Right-handed alpha
Helix 20
AC2
A
324 330Right-handed alpha
Helix 21
AC3
A
336 343Right-handed alpha
Helix 22
AC4
A
346 368Right-handed alpha
Helix 23
AC5
A
371 375Right-handed 310
Helix 24
AC6
A
377 403Right-handed alpha
Helix 25
AC7
A
404 424Right-handed alpha
Helix 26
AC8
A
430 460Right-handed alpha
Helix 27
AC9
A
464 486Right-handed alpha
Helix 28
AD1
A
487 493Right-handed 310
Helix 29
AD2
A
494 513Right-handed alpha
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There are 3 sheets in PDB entry 9DKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
113 115anti-parallel
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