Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DKD entry

There is 1 chain in PDB entry 9DKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1370GLU 4091
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 9DKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1370 1380Right-handed alpha
Helix 2
AA2
A
1397 1406Right-handed alpha
Helix 3
AA3
A
1426 1459Right-handed alpha
Helix 4
AA4
A
1462 1467Right-handed alpha
Helix 5
AA5
A
1469 1492Right-handed alpha
Helix 6
AA6
A
1506 1534Right-handed alpha
Helix 7
AA7
A
1536 1540Right-handed 310
Helix 8
AA8
A
1541 1551Right-handed alpha
Helix 9
AA9
A
1561 1567Right-handed alpha
Helix 10
AB1
A
1603 1632Right-handed alpha
Helix 11
AB2
A
1635 1640Right-handed alpha
Helix 12
AB3
A
1644 1665Right-handed alpha
Helix 13
AB4
A
1669 1689Right-handed alpha
Helix 14
AB5
A
1691 1717Right-handed alpha
Helix 15
AB6
A
1720 1730Right-handed alpha
Helix 16
AB7
A
1772 1788Right-handed alpha
Helix 17
AB8
A
1802 1813Right-handed alpha
Helix 18
AB9
A
1827 1842Right-handed alpha
Helix 19
AC1
A
1849 1853Right-handed 310
Helix 20
AC2
A
1854 1874Right-handed alpha
Helix 21
AC3
A
1909 1914Right-handed alpha
Helix 22
AC4
A
1925 1938Right-handed alpha
Helix 23
AC5
A
1942 1960Right-handed alpha
Helix 24
AC6
A
1969 1985Right-handed alpha
Helix 25
AC7
A
1990 2002Right-handed alpha
Helix 26
AC8
A
2003 2006Right-handed 310
Helix 27
AC9
A
2008 2022Right-handed alpha
Helix 28
AD1
A
2032 2046Right-handed alpha
Helix 29
AD2
A
2050 2065Right-handed alpha
Helix 30
AD3
A
2079 2096Right-handed alpha
Helix 31
AD4
A
2110 2115Right-handed alpha
Helix 32
AD5
A
2128 2140Right-handed alpha
Helix 33
AD6
A
2143 2146Right-handed 310
Helix 34
AD7
A
2159 2164Right-handed alpha
Helix 35
AD8
A
2166 2171Right-handed alpha
Helix 36
AD9
A
2205 2210Right-handed alpha
Helix 37
AE1
A
2221 2237Right-handed alpha
Helix 38
AE2
A
2245 2256Right-handed alpha
Helix 39
AE3
A
2258 2270Right-handed alpha
Helix 40
AE4
A
2279 2282Right-handed 310
Helix 41
AE5
A
2283 2298Right-handed alpha
Helix 42
AE6
A
2299 2302Right-handed 310
Helix 43
AE7
A
2306 2327Right-handed alpha
Helix 44
AE8
A
2331 2347Right-handed alpha
Helix 45
AE9
A
2372 2374Right-handed 310
Helix 46
AF1
A
2381 2385Right-handed 310
Helix 47
AF2
A
2394 2410Right-handed alpha
Helix 48
AF3
A
2423 2432Right-handed alpha
Helix 49
AF4
A
2450 2460Right-handed alpha
Helix 50
AF5
A
2500 2513Right-handed alpha
Helix 51
AF6
A
2547 2552Right-handed alpha
Helix 52
AF7
A
2563 2580Right-handed alpha
Helix 53
AF8
A
2582 2587Right-handed 310
Helix 54
AF9
A
2588 2606Right-handed alpha
Helix 55
AG1
A
2618 2635Right-handed alpha
Helix 56
AG2
A
2640 2656Right-handed alpha
Helix 57
AG3
A
2657 2659Right-handed 310
Helix 58
AG4
A
2662 2681Right-handed alpha
Helix 59
AG5
A
2708 2727Right-handed alpha
Helix 60
AG6
A
2735 2750Right-handed alpha
Helix 61
AG7
A
2765 2777Right-handed alpha
Helix 62
AG8
A
2791 2810Right-handed alpha
Helix 63
AG9
A
2824 2837Right-handed alpha
Helix 64
AH1
A
2840 2844Right-handed 310
Helix 65
AH2
A
2846 2860Right-handed alpha
Helix 66
AH3
A
2870 2884Right-handed alpha
Helix 67
AH4
A
2899 2905Right-handed alpha
Helix 68
AH5
A
2921 2934Right-handed alpha
Helix 69
AH6
A
2961 2980Right-handed alpha
Helix 70
AH7
A
2989 3025Right-handed alpha
Helix 71
AH8
A
3299 3334Right-handed alpha
Helix 72
AH9
A
3338 3357Right-handed alpha
Helix 73
AI1
A
3365 3371Right-handed alpha
Helix 74
AI2
A
3372 3383Right-handed alpha
Helix 75
AI3
A
3387 3399Right-handed alpha
Helix 76
AI4
A
3412 3423Right-handed alpha
Helix 77
AI5
A
3436 3447Right-handed alpha
Helix 78
AI6
A
3454 3458Right-handed 310
Helix 79
AI7
A
3462 3468Right-handed alpha
Helix 80
AI8
A
3506 3511Right-handed alpha
Helix 81
AI9
A
3521 3537Right-handed alpha
Helix 82
AJ1
A
3538 3572Right-handed alpha
Helix 83
AJ2
A
3593 3605Right-handed alpha
Helix 84
AJ3
A
3607 3618Right-handed alpha
Helix 85
AJ4
A
3619 3639Right-handed alpha
Helix 86
AJ5
A
3645 3659Right-handed alpha
Helix 87
AJ6
A
3670 3687Right-handed alpha
Helix 88
AJ7
A
3691 3708Right-handed alpha
Helix 89
AJ8
A
3712 3727Right-handed alpha
Helix 90
AJ9
A
3742 3752Right-handed alpha
Helix 91
AK1
A
3755 3768Right-handed alpha
Helix 92
AK2
A
3773 3780Right-handed alpha
Helix 93
AK3
A
3796 3808Right-handed alpha
Helix 94
AK4
A
3818 3836Right-handed alpha
Helix 95
AK5
A
3847 3860Right-handed alpha
Helix 96
AK6
A
3885 3891Right-handed alpha
Helix 97
AK7
A
3902 3914Right-handed alpha
Helix 98
AK8
A
3923 3944Right-handed alpha
Helix 99
AK9
A
3957 3975Right-handed alpha
Helix 100
AL1
A
3981 3992Right-handed alpha
Helix 101
AL2
A
4000 4015Right-handed alpha
Helix 102
AL3
A
4037 4052Right-handed alpha
Helix 103
AL4
A
4066 4090Right-handed alpha
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There are 14 sheets in PDB entry 9DKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1571 1574first strand
Strand 2
A
1578 1583anti-parallel
Strand 3
A
1589 1597anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1733 1734first strand
Strand 2
A
1748 1751anti-parallel
Strand 3
A
1754 1757anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1817 1821first strand
Strand 2
A
1844 1848parallel
Strand 3
A
1893 1898parallel
Strand 4
A
1791 1795parallel
Strand 5
A
1916 1917parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1878 1881first strand
Strand 2
A
1884 1887anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2098 2103first strand
Strand 2
A
2148 2154parallel
Strand 3
A
2190 2196parallel
Strand 4
A
2069 2074parallel
Strand 5
A
2211 2215parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2357 2360first strand
Strand 2
A
2367 2370anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2438 2440first strand
Strand 2
A
2481 2487parallel
Strand 3
A
2443 2444parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2438 2440first strand
Strand 2
A
2481 2487parallel
Strand 3
A
2529 2535parallel
Strand 4
A
2413 2417parallel
Strand 5
A
2554 2558parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2462 2465first strand
Strand 2
A
2472 2475anti-parallel
Strand 3
A
2523 2526parallel
Strand 4
A
2514 2516anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2696 2697first strand
Strand 2
A
2705 2706anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2780 2782first strand
Strand 2
A
2813 2818parallel
Strand 3
A
2886 2891parallel
Strand 4
A
2755 2759parallel
Strand 5
A
2912 2916parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3426 3429first strand
Strand 2
A
3449 3452parallel
Strand 3
A
3494 3498parallel
Strand 4
A
3405 3408parallel
Strand 5
A
3514 3517parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3478 3481first strand
Strand 2
A
3484 3487anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3811 3815first strand
Strand 2
A
3837 3842parallel
Strand 3
A
3871 3878parallel
Strand 4
A
3786 3790parallel
Strand 5
A
3893 3897parallel
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