Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DKF entry

There are 4 chains in PDB entry 9DKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	LYS 1065
B	ARG 14	LYS 1065
C	ARG 14	LYS 1065
D	ARG 14	LYS 1065

There are204 helices in PDB entry 9DKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	44	Right-handed alpha
Helix 2	AA2	A	80	93	Right-handed alpha
Helix 3	AA3	A	96	123	Right-handed alpha
Helix 4	AA4	A	136	160	Right-handed alpha
Helix 5	AA5	A	162	167	Right-handed alpha
Helix 6	AA6	A	169	177	Right-handed alpha
Helix 7	AA7	A	178	188	Right-handed alpha
Helix 8	AA8	A	195	204	Right-handed 310
Helix 9	AA9	A	205	213	Right-handed alpha
Helix 10	AB1	A	218	249	Right-handed alpha
Helix 11	AB2	A	250	254	Right-handed 310
Helix 12	AB3	A	262	275	Right-handed alpha
Helix 13	AB4	A	286	317	Right-handed alpha
Helix 14	AB5	A	341	353	Right-handed alpha
Helix 15	AB6	A	373	383	Right-handed alpha
Helix 16	AB7	A	396	403	Right-handed alpha
Helix 17	AB8	A	404	408	Right-handed 310
Helix 18	AB9	A	421	440	Right-handed alpha
Helix 19	AC1	A	451	460	Right-handed alpha
Helix 20	AC2	A	465	469	Right-handed 310
Helix 21	AC3	A	475	489	Right-handed alpha
Helix 22	AC4	A	491	499	Right-handed alpha
Helix 23	AC5	A	512	523	Right-handed alpha
Helix 24	AC6	A	532	536	Right-handed 310
Helix 25	AC7	A	539	550	Right-handed alpha
Helix 26	AC8	A	592	597	Right-handed alpha
Helix 27	AC9	A	597	602	Right-handed alpha
Helix 28	AD1	A	604	608	Right-handed 310
Helix 29	AD2	A	612	616	Right-handed 310
Helix 30	AD3	A	721	725	Right-handed 310
Helix 31	AD4	A	728	735	Right-handed alpha
Helix 32	AD5	A	756	761	Right-handed alpha
Helix 33	AD6	A	762	765	Right-handed 310
Helix 34	AD7	A	769	773	Right-handed 310
Helix 35	AD8	A	781	793	Right-handed alpha
Helix 36	AD9	A	807	814	Right-handed alpha
Helix 37	AE1	A	815	819	Right-handed 310
Helix 38	AE2	A	836	838	Right-handed 310
Helix 39	AE3	A	839	852	Right-handed alpha
Helix 40	AE4	A	882	886	Right-handed 310
Helix 41	AE5	A	894	901	Right-handed 310
Helix 42	AE6	A	912	915	Right-handed 310
Helix 43	AE7	A	916	921	Right-handed alpha
Helix 44	AE8	A	928	931	Right-handed 310
Helix 45	AE9	A	932	940	Right-handed alpha
Helix 46	AF1	A	940	952	Right-handed alpha
Helix 47	AF2	A	956	965	Right-handed alpha
Helix 48	AF3	A	975	980	Right-handed alpha
Helix 49	AF4	A	981	983	Right-handed 310
Helix 50	AF5	A	997	1002	Right-handed alpha
Helix 51	AF6	A	1005	1018	Right-handed alpha
Helix 52	AF7	B	15	44	Right-handed alpha
Helix 53	AF8	B	80	93	Right-handed alpha
Helix 54	AF9	B	96	123	Right-handed alpha
Helix 55	AG1	B	136	160	Right-handed alpha
Helix 56	AG2	B	162	167	Right-handed alpha
Helix 57	AG3	B	169	177	Right-handed alpha
Helix 58	AG4	B	178	188	Right-handed alpha
Helix 59	AG5	B	195	204	Right-handed 310
Helix 60	AG6	B	205	213	Right-handed alpha
Helix 61	AG7	B	218	249	Right-handed alpha
Helix 62	AG8	B	250	254	Right-handed 310
Helix 63	AG9	B	262	275	Right-handed alpha
Helix 64	AH1	B	286	317	Right-handed alpha
Helix 65	AH2	B	341	353	Right-handed alpha
Helix 66	AH3	B	373	383	Right-handed alpha
Helix 67	AH4	B	396	403	Right-handed alpha
Helix 68	AH5	B	404	408	Right-handed 310
Helix 69	AH6	B	421	440	Right-handed alpha
Helix 70	AH7	B	451	460	Right-handed alpha
Helix 71	AH8	B	465	469	Right-handed 310
Helix 72	AH9	B	475	489	Right-handed alpha
Helix 73	AI1	B	491	499	Right-handed alpha
Helix 74	AI2	B	512	523	Right-handed alpha
Helix 75	AI3	B	532	536	Right-handed 310
Helix 76	AI4	B	539	550	Right-handed alpha
Helix 77	AI5	B	592	597	Right-handed alpha
Helix 78	AI6	B	597	602	Right-handed alpha
Helix 79	AI7	B	604	608	Right-handed 310
Helix 80	AI8	B	612	616	Right-handed 310
Helix 81	AI9	B	721	725	Right-handed 310
Helix 82	AJ1	B	728	735	Right-handed alpha
Helix 83	AJ2	B	756	761	Right-handed alpha
Helix 84	AJ3	B	762	765	Right-handed 310
Helix 85	AJ4	B	769	773	Right-handed 310
Helix 86	AJ5	B	781	793	Right-handed alpha
Helix 87	AJ6	B	807	814	Right-handed alpha
Helix 88	AJ7	B	815	819	Right-handed 310
Helix 89	AJ8	B	836	838	Right-handed 310
Helix 90	AJ9	B	839	852	Right-handed alpha
Helix 91	AK1	B	882	886	Right-handed 310
Helix 92	AK2	B	894	901	Right-handed 310
Helix 93	AK3	B	912	915	Right-handed 310
Helix 94	AK4	B	916	921	Right-handed alpha
Helix 95	AK5	B	928	931	Right-handed 310
Helix 96	AK6	B	932	940	Right-handed alpha
Helix 97	AK7	B	940	952	Right-handed alpha
Helix 98	AK8	B	956	965	Right-handed alpha
Helix 99	AK9	B	975	980	Right-handed alpha
Helix 100	AL1	B	981	983	Right-handed 310
Helix 101	AL2	B	997	1002	Right-handed alpha
Helix 102	AL3	B	1005	1018	Right-handed alpha
Helix 103	AL4	C	15	44	Right-handed alpha
Helix 104	AL5	C	80	93	Right-handed alpha
Helix 105	AL6	C	96	123	Right-handed alpha
Helix 106	AL7	C	136	160	Right-handed alpha
Helix 107	AL8	C	162	167	Right-handed alpha
Helix 108	AL9	C	169	177	Right-handed alpha
Helix 109	AM1	C	178	188	Right-handed alpha
Helix 110	AM2	C	195	204	Right-handed 310
Helix 111	AM3	C	205	213	Right-handed alpha
Helix 112	AM4	C	218	249	Right-handed alpha
Helix 113	AM5	C	250	254	Right-handed 310
Helix 114	AM6	C	262	275	Right-handed alpha
Helix 115	AM7	C	286	317	Right-handed alpha
Helix 116	AM8	C	341	353	Right-handed alpha
Helix 117	AM9	C	373	383	Right-handed alpha
Helix 118	AN1	C	396	403	Right-handed alpha
Helix 119	AN2	C	404	408	Right-handed 310
Helix 120	AN3	C	421	440	Right-handed alpha
Helix 121	AN4	C	451	460	Right-handed alpha
Helix 122	AN5	C	465	469	Right-handed 310
Helix 123	AN6	C	475	489	Right-handed alpha
Helix 124	AN7	C	491	499	Right-handed alpha
Helix 125	AN8	C	512	523	Right-handed alpha
Helix 126	AN9	C	532	536	Right-handed 310
Helix 127	AO1	C	539	550	Right-handed alpha
Helix 128	AO2	C	592	597	Right-handed alpha
Helix 129	AO3	C	597	602	Right-handed alpha
Helix 130	AO4	C	604	608	Right-handed 310
Helix 131	AO5	C	612	616	Right-handed 310
Helix 132	AO6	C	721	725	Right-handed 310
Helix 133	AO7	C	728	735	Right-handed alpha
Helix 134	AO8	C	756	761	Right-handed alpha
Helix 135	AO9	C	762	765	Right-handed 310
Helix 136	AP1	C	769	773	Right-handed 310
Helix 137	AP2	C	781	793	Right-handed alpha
Helix 138	AP3	C	807	814	Right-handed alpha
Helix 139	AP4	C	815	819	Right-handed 310
Helix 140	AP5	C	836	838	Right-handed 310
Helix 141	AP6	C	839	852	Right-handed alpha
Helix 142	AP7	C	882	886	Right-handed 310
Helix 143	AP8	C	894	901	Right-handed 310
Helix 144	AP9	C	912	915	Right-handed 310
Helix 145	AQ1	C	916	921	Right-handed alpha
Helix 146	AQ2	C	928	931	Right-handed 310
Helix 147	AQ3	C	932	940	Right-handed alpha
Helix 148	AQ4	C	940	952	Right-handed alpha
Helix 149	AQ5	C	956	965	Right-handed alpha
Helix 150	AQ6	C	975	980	Right-handed alpha
Helix 151	AQ7	C	981	983	Right-handed 310
Helix 152	AQ8	C	997	1002	Right-handed alpha
Helix 153	AQ9	C	1005	1018	Right-handed alpha
Helix 154	AR1	D	15	44	Right-handed alpha
Helix 155	AR2	D	80	93	Right-handed alpha
Helix 156	AR3	D	96	123	Right-handed alpha
Helix 157	AR4	D	136	160	Right-handed alpha
Helix 158	AR5	D	162	167	Right-handed alpha
Helix 159	AR6	D	169	177	Right-handed alpha
Helix 160	AR7	D	178	188	Right-handed alpha
Helix 161	AR8	D	195	204	Right-handed 310
Helix 162	AR9	D	205	213	Right-handed alpha
Helix 163	AS1	D	218	249	Right-handed alpha
Helix 164	AS2	D	250	254	Right-handed 310
Helix 165	AS3	D	262	275	Right-handed alpha
Helix 166	AS4	D	286	317	Right-handed alpha
Helix 167	AS5	D	341	353	Right-handed alpha
Helix 168	AS6	D	373	383	Right-handed alpha
Helix 169	AS7	D	396	403	Right-handed alpha
Helix 170	AS8	D	404	408	Right-handed 310
Helix 171	AS9	D	421	440	Right-handed alpha
Helix 172	AT1	D	451	460	Right-handed alpha
Helix 173	AT2	D	465	469	Right-handed 310
Helix 174	AT3	D	475	489	Right-handed alpha
Helix 175	AT4	D	491	499	Right-handed alpha
Helix 176	AT5	D	512	523	Right-handed alpha
Helix 177	AT6	D	532	536	Right-handed 310
Helix 178	AT7	D	539	550	Right-handed alpha
Helix 179	AT8	D	592	597	Right-handed alpha
Helix 180	AT9	D	597	602	Right-handed alpha
Helix 181	AU1	D	604	608	Right-handed 310
Helix 182	AU2	D	612	616	Right-handed 310
Helix 183	AU3	D	721	725	Right-handed 310
Helix 184	AU4	D	728	735	Right-handed alpha
Helix 185	AU5	D	756	761	Right-handed alpha
Helix 186	AU6	D	762	765	Right-handed 310
Helix 187	AU7	D	769	773	Right-handed 310
Helix 188	AU8	D	781	793	Right-handed alpha
Helix 189	AU9	D	807	814	Right-handed alpha
Helix 190	AV1	D	815	819	Right-handed 310
Helix 191	AV2	D	836	838	Right-handed 310
Helix 192	AV3	D	839	852	Right-handed alpha
Helix 193	AV4	D	882	886	Right-handed 310
Helix 194	AV5	D	894	901	Right-handed 310
Helix 195	AV6	D	912	915	Right-handed 310
Helix 196	AV7	D	916	921	Right-handed alpha
Helix 197	AV8	D	928	931	Right-handed 310
Helix 198	AV9	D	932	940	Right-handed alpha
Helix 199	AW1	D	940	952	Right-handed alpha
Helix 200	AW2	D	956	965	Right-handed alpha
Helix 201	AW3	D	975	980	Right-handed alpha
Helix 202	AW4	D	981	983	Right-handed 310
Helix 203	AW5	D	997	1002	Right-handed alpha
Helix 204	AW6	D	1005	1018	Right-handed alpha

There are 20 sheets in PDB entry 9DKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	391	first strand
Strand 2	A	362	368	parallel
Strand 3	A	332	338	parallel
Strand 4	A	410	414	parallel
Strand 5	A	445	449	parallel
Strand 6	A	471	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	554	560	anti-parallel
Strand 4	A	569	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	971	972	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	802	first strand
Strand 2	A	776	780	parallel
Strand 3	A	741	746	parallel
Strand 4	A	821	826	parallel
Strand 5	A	888	892	parallel
Strand 6	A	924	926	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	991	first strand
Strand 2	A	1058	1063	anti-parallel
Strand 3	A	1020	1027	anti-parallel
Strand 4	A	1041	1045	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	391	first strand
Strand 2	B	362	368	parallel
Strand 3	B	332	338	parallel
Strand 4	B	410	414	parallel
Strand 5	B	445	449	parallel
Strand 6	B	471	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	554	560	anti-parallel
Strand 4	B	569	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	709	first strand
Strand 2	B	971	972	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	802	first strand
Strand 2	B	776	780	parallel
Strand 3	B	741	746	parallel
Strand 4	B	821	826	parallel
Strand 5	B	888	892	parallel
Strand 6	B	924	926	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	991	first strand
Strand 2	B	1058	1063	anti-parallel
Strand 3	B	1020	1027	anti-parallel
Strand 4	B	1041	1045	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	391	first strand
Strand 2	C	362	368	parallel
Strand 3	C	332	338	parallel
Strand 4	C	410	414	parallel
Strand 5	C	445	449	parallel
Strand 6	C	471	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	530	first strand
Strand 2	C	585	590	anti-parallel
Strand 3	C	554	560	anti-parallel
Strand 4	C	569	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	971	972	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	802	first strand
Strand 2	C	776	780	parallel
Strand 3	C	741	746	parallel
Strand 4	C	821	826	parallel
Strand 5	C	888	892	parallel
Strand 6	C	924	926	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	986	991	first strand
Strand 2	C	1058	1063	anti-parallel
Strand 3	C	1020	1027	anti-parallel
Strand 4	C	1041	1045	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	391	first strand
Strand 2	D	362	368	parallel
Strand 3	D	332	338	parallel
Strand 4	D	410	414	parallel
Strand 5	D	445	449	parallel
Strand 6	D	471	474	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	530	first strand
Strand 2	D	585	590	anti-parallel
Strand 3	D	554	560	anti-parallel
Strand 4	D	569	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	708	709	first strand
Strand 2	D	971	972	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	802	first strand
Strand 2	D	776	780	parallel
Strand 3	D	741	746	parallel
Strand 4	D	821	826	parallel
Strand 5	D	888	892	parallel
Strand 6	D	924	926	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	986	991	first strand
Strand 2	D	1058	1063	anti-parallel
Strand 3	D	1020	1027	anti-parallel
Strand 4	D	1041	1045	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKF