Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DKH entry

There are 2 chains in PDB entry 9DKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1443	GLU 4091
C	VAL 139	ARG 494

There are111 helices in PDB entry 9DKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1443	1461	Right-handed alpha
Helix 2	AA2	A	1471	1488	Right-handed alpha
Helix 3	AA3	A	1512	1523	Right-handed alpha
Helix 4	AA4	A	1523	1534	Right-handed alpha
Helix 5	AA5	A	1535	1538	Right-handed 310
Helix 6	AA6	A	1541	1551	Right-handed alpha
Helix 7	AA7	A	1562	1567	Right-handed alpha
Helix 8	AA8	A	1603	1632	Right-handed alpha
Helix 9	AA9	A	1635	1640	Right-handed alpha
Helix 10	AB1	A	1644	1665	Right-handed alpha
Helix 11	AB2	A	1669	1688	Right-handed alpha
Helix 12	AB3	A	1691	1717	Right-handed alpha
Helix 13	AB4	A	1720	1731	Right-handed alpha
Helix 14	AB5	A	1772	1787	Right-handed alpha
Helix 15	AB6	A	1802	1812	Right-handed alpha
Helix 16	AB7	A	1830	1842	Right-handed alpha
Helix 17	AB8	A	1849	1853	Right-handed 310
Helix 18	AB9	A	1854	1875	Right-handed alpha
Helix 19	AC1	A	1909	1914	Right-handed alpha
Helix 20	AC2	A	1925	1938	Right-handed alpha
Helix 21	AC3	A	1942	1959	Right-handed alpha
Helix 22	AC4	A	1969	1988	Right-handed alpha
Helix 23	AC5	A	1990	2003	Right-handed alpha
Helix 24	AC6	A	2004	2006	Right-handed 310
Helix 25	AC7	A	2008	2022	Right-handed alpha
Helix 26	AC8	A	2031	2045	Right-handed alpha
Helix 27	AC9	A	2050	2067	Right-handed alpha
Helix 28	AD1	A	2079	2096	Right-handed alpha
Helix 29	AD2	A	2110	2115	Right-handed alpha
Helix 30	AD3	A	2128	2140	Right-handed alpha
Helix 31	AD4	A	2144	2148	Right-handed 310
Helix 32	AD5	A	2159	2165	Right-handed alpha
Helix 33	AD6	A	2166	2171	Right-handed alpha
Helix 34	AD7	A	2203	2210	Right-handed alpha
Helix 35	AD8	A	2221	2236	Right-handed alpha
Helix 36	AD9	A	2246	2257	Right-handed alpha
Helix 37	AE1	A	2258	2270	Right-handed alpha
Helix 38	AE2	A	2279	2282	Right-handed 310
Helix 39	AE3	A	2283	2299	Right-handed alpha
Helix 40	AE4	A	2300	2302	Right-handed 310
Helix 41	AE5	A	2306	2327	Right-handed alpha
Helix 42	AE6	A	2331	2347	Right-handed alpha
Helix 43	AE7	A	2370	2374	Right-handed 310
Helix 44	AE8	A	2381	2385	Right-handed 310
Helix 45	AE9	A	2394	2410	Right-handed alpha
Helix 46	AF1	A	2423	2434	Right-handed alpha
Helix 47	AF2	A	2450	2460	Right-handed alpha
Helix 48	AF3	A	2501	2512	Right-handed alpha
Helix 49	AF4	A	2547	2552	Right-handed alpha
Helix 50	AF5	A	2563	2580	Right-handed alpha
Helix 51	AF6	A	2582	2587	Right-handed 310
Helix 52	AF7	A	2588	2607	Right-handed alpha
Helix 53	AF8	A	2618	2634	Right-handed alpha
Helix 54	AF9	A	2640	2656	Right-handed alpha
Helix 55	AG1	A	2662	2681	Right-handed alpha
Helix 56	AG2	A	2690	2694	Right-handed 310
Helix 57	AG3	A	2708	2727	Right-handed alpha
Helix 58	AG4	A	2735	2751	Right-handed alpha
Helix 59	AG5	A	2766	2777	Right-handed alpha
Helix 60	AG6	A	2791	2808	Right-handed alpha
Helix 61	AG7	A	2818	2822	Right-handed 310
Helix 62	AG8	A	2824	2837	Right-handed alpha
Helix 63	AG9	A	2840	2844	Right-handed 310
Helix 64	AH1	A	2846	2864	Right-handed alpha
Helix 65	AH2	A	2869	2884	Right-handed alpha
Helix 66	AH3	A	2896	2904	Right-handed alpha
Helix 67	AH4	A	2905	2910	Right-handed alpha
Helix 68	AH5	A	2921	2934	Right-handed alpha
Helix 69	AH6	A	2949	2953	Right-handed 310
Helix 70	AH7	A	2960	2980	Right-handed alpha
Helix 71	AH8	A	2989	3039	Right-handed alpha
Helix 72	AH9	A	3285	3318	Right-handed alpha
Helix 73	AI1	A	3319	3333	Right-handed alpha
Helix 74	AI2	A	3334	3337	Right-handed 310
Helix 75	AI3	A	3338	3356	Right-handed alpha
Helix 76	AI4	A	3365	3371	Right-handed alpha
Helix 77	AI5	A	3372	3383	Right-handed alpha
Helix 78	AI6	A	3387	3399	Right-handed alpha
Helix 79	AI7	A	3413	3423	Right-handed alpha
Helix 80	AI8	A	3424	3426	Right-handed 310
Helix 81	AI9	A	3435	3447	Right-handed alpha
Helix 82	AJ1	A	3454	3458	Right-handed 310
Helix 83	AJ2	A	3459	3461	Right-handed 310
Helix 84	AJ3	A	3462	3468	Right-handed alpha
Helix 85	AJ4	A	3506	3511	Right-handed alpha
Helix 86	AJ5	A	3521	3538	Right-handed alpha
Helix 87	AJ6	A	3538	3569	Right-handed alpha
Helix 88	AJ7	A	3580	3606	Right-handed alpha
Helix 89	AJ8	A	3607	3618	Right-handed alpha
Helix 90	AJ9	A	3619	3639	Right-handed alpha
Helix 91	AK1	A	3645	3659	Right-handed alpha
Helix 92	AK2	A	3669	3687	Right-handed alpha
Helix 93	AK3	A	3691	3711	Right-handed alpha
Helix 94	AK4	A	3712	3728	Right-handed alpha
Helix 95	AK5	A	3742	3753	Right-handed alpha
Helix 96	AK6	A	3755	3767	Right-handed alpha
Helix 97	AK7	A	3773	3780	Right-handed alpha
Helix 98	AK8	A	3796	3807	Right-handed alpha
Helix 99	AK9	A	3818	3836	Right-handed alpha
Helix 100	AL1	A	3847	3859	Right-handed alpha
Helix 101	AL2	A	3885	3891	Right-handed alpha
Helix 102	AL3	A	3903	3913	Right-handed alpha
Helix 103	AL4	A	3922	3945	Right-handed alpha
Helix 104	AL5	A	3945	3950	Right-handed alpha
Helix 105	AL6	A	3957	3974	Right-handed alpha
Helix 106	AL7	A	3981	3992	Right-handed alpha
Helix 107	AL8	A	4000	4015	Right-handed alpha
Helix 108	AL9	A	4037	4052	Right-handed alpha
Helix 109	AM1	A	4057	4062	Right-handed alpha
Helix 110	AM2	A	4066	4091	Right-handed alpha
Helix 111	AM3	C	362	369	Right-handed alpha

There are 22 sheets in PDB entry 9DKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1569	1574	first strand
Strand 2	A	1578	1584	anti-parallel
Strand 3	A	1596	1597	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1751	anti-parallel
Strand 3	A	1754	1757	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1819	first strand
Strand 2	A	1845	1846	parallel
Strand 3	A	1894	1898	parallel
Strand 4	A	1791	1795	parallel
Strand 5	A	1916	1920	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2099	2104	first strand
Strand 2	A	2149	2154	parallel
Strand 3	A	2191	2196	parallel
Strand 4	A	2070	2074	parallel
Strand 5	A	2211	2215	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2116	2119	first strand
Strand 2	A	2124	2127	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2438	2441	first strand
Strand 2	A	2481	2484	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2413	2417	parallel
Strand 5	A	2554	2558	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2462	2464	first strand
Strand 2	A	2472	2475	anti-parallel
Strand 3	A	2525	2526	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2696	2697	first strand
Strand 2	A	2705	2706	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2781	2782	first strand
Strand 2	A	2813	2817	parallel
Strand 3	A	2885	2891	parallel
Strand 4	A	2756	2760	parallel
Strand 5	A	2913	2918	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3427	3430	first strand
Strand 2	A	3450	3453	parallel
Strand 3	A	3494	3498	parallel
Strand 4	A	3405	3408	parallel
Strand 5	A	3514	3517	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3471	3473	first strand
Strand 2	A	3476	3481	anti-parallel
Strand 3	A	3484	3487	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3815	first strand
Strand 2	A	3838	3842	parallel
Strand 3	A	3873	3875	parallel
Strand 4	A	3785	3789	parallel
Strand 5	A	3893	3896	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4020	4021	first strand
Strand 2	A	4029	4030	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	488	493	anti-parallel
Strand 3	C	479	484	anti-parallel
Strand 4	C	461	465	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	182	183	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	194	195	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	220	226	anti-parallel
Strand 3	C	231	236	anti-parallel
Strand 4	C	245	249	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	263	first strand
Strand 2	C	268	274	anti-parallel
Strand 3	C	279	283	anti-parallel
Strand 4	C	289	293	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	306	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	318	323	anti-parallel
Strand 4	C	329	334	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	346	first strand
Strand 2	C	372	377	anti-parallel
Strand 3	C	381	386	anti-parallel
Strand 4	C	409	414	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	429	434	anti-parallel
Strand 3	C	439	443	anti-parallel
Strand 4	C	449	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKH