Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DKJ entry

There is 1 chain in PDB entry 9DKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1467GLU 4091
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 9DKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1467 1470Right-handed 310
Helix 2
AA2
A
1471 1495Right-handed alpha
Helix 3
AA3
A
1511 1521Right-handed alpha
Helix 4
AA4
A
1523 1531Right-handed alpha
Helix 5
AA5
A
1532 1533Right-handed 310
Helix 6
AA6
A
1534 1540Right-handed 310
Helix 7
AA7
A
1541 1551Right-handed alpha
Helix 8
AA8
A
1557 1560Right-handed 310
Helix 9
AA9
A
1561 1566Right-handed alpha
Helix 10
AB1
A
1603 1631Right-handed alpha
Helix 11
AB2
A
1635 1639Right-handed 310
Helix 12
AB3
A
1644 1665Right-handed alpha
Helix 13
AB4
A
1669 1689Right-handed alpha
Helix 14
AB5
A
1691 1717Right-handed alpha
Helix 15
AB6
A
1720 1730Right-handed alpha
Helix 16
AB7
A
1742 1745Right-handed 310
Helix 17
AB8
A
1772 1788Right-handed alpha
Helix 18
AB9
A
1801 1813Right-handed alpha
Helix 19
AC1
A
1827 1842Right-handed alpha
Helix 20
AC2
A
1850 1853Right-handed 310
Helix 21
AC3
A
1854 1861Right-handed alpha
Helix 22
AC4
A
1861 1875Right-handed alpha
Helix 23
AC5
A
1909 1914Right-handed alpha
Helix 24
AC6
A
1925 1938Right-handed alpha
Helix 25
AC7
A
1941 1960Right-handed alpha
Helix 26
AC8
A
1969 1981Right-handed alpha
Helix 27
AC9
A
1983 1988Right-handed alpha
Helix 28
AD1
A
1990 2002Right-handed alpha
Helix 29
AD2
A
2003 2006Right-handed 310
Helix 30
AD3
A
2007 2022Right-handed alpha
Helix 31
AD4
A
2031 2046Right-handed alpha
Helix 32
AD5
A
2050 2064Right-handed alpha
Helix 33
AD6
A
2079 2096Right-handed alpha
Helix 34
AD7
A
2110 2115Right-handed alpha
Helix 35
AD8
A
2128 2140Right-handed alpha
Helix 36
AD9
A
2159 2164Right-handed alpha
Helix 37
AE1
A
2166 2171Right-handed alpha
Helix 38
AE2
A
2203 2208Right-handed alpha
Helix 39
AE3
A
2221 2236Right-handed alpha
Helix 40
AE4
A
2245 2257Right-handed alpha
Helix 41
AE5
A
2258 2269Right-handed alpha
Helix 42
AE6
A
2270 2272Right-handed 310
Helix 43
AE7
A
2283 2297Right-handed alpha
Helix 44
AE8
A
2306 2327Right-handed alpha
Helix 45
AE9
A
2331 2346Right-handed alpha
Helix 46
AF1
A
2394 2410Right-handed alpha
Helix 47
AF2
A
2423 2434Right-handed alpha
Helix 48
AF3
A
2450 2458Right-handed alpha
Helix 49
AF4
A
2500 2513Right-handed alpha
Helix 50
AF5
A
2547 2552Right-handed alpha
Helix 51
AF6
A
2563 2580Right-handed alpha
Helix 52
AF7
A
2582 2587Right-handed 310
Helix 53
AF8
A
2588 2607Right-handed alpha
Helix 54
AF9
A
2618 2635Right-handed alpha
Helix 55
AG1
A
2640 2657Right-handed alpha
Helix 56
AG2
A
2662 2681Right-handed alpha
Helix 57
AG3
A
2708 2727Right-handed alpha
Helix 58
AG4
A
2735 2750Right-handed alpha
Helix 59
AG5
A
2765 2777Right-handed alpha
Helix 60
AG6
A
2791 2809Right-handed alpha
Helix 61
AG7
A
2824 2837Right-handed alpha
Helix 62
AG8
A
2846 2863Right-handed alpha
Helix 63
AG9
A
2869 2884Right-handed alpha
Helix 64
AH1
A
2896 2904Right-handed alpha
Helix 65
AH2
A
2905 2911Right-handed alpha
Helix 66
AH3
A
2921 2933Right-handed alpha
Helix 67
AH4
A
2960 2980Right-handed alpha
Helix 68
AH5
A
2989 3034Right-handed alpha
Helix 69
AH6
A
3290 3334Right-handed alpha
Helix 70
AH7
A
3335 3337Right-handed 310
Helix 71
AH8
A
3338 3356Right-handed alpha
Helix 72
AH9
A
3365 3371Right-handed alpha
Helix 73
AI1
A
3372 3383Right-handed alpha
Helix 74
AI2
A
3387 3399Right-handed alpha
Helix 75
AI3
A
3412 3423Right-handed alpha
Helix 76
AI4
A
3424 3426Right-handed 310
Helix 77
AI5
A
3435 3447Right-handed alpha
Helix 78
AI6
A
3459 3461Right-handed 310
Helix 79
AI7
A
3462 3468Right-handed alpha
Helix 80
AI8
A
3506 3512Right-handed alpha
Helix 81
AI9
A
3521 3538Right-handed alpha
Helix 82
AJ1
A
3538 3573Right-handed alpha
Helix 83
AJ2
A
3583 3605Right-handed alpha
Helix 84
AJ3
A
3607 3639Right-handed alpha
Helix 85
AJ4
A
3645 3659Right-handed alpha
Helix 86
AJ5
A
3670 3687Right-handed alpha
Helix 87
AJ6
A
3691 3711Right-handed alpha
Helix 88
AJ7
A
3712 3727Right-handed alpha
Helix 89
AJ8
A
3743 3753Right-handed alpha
Helix 90
AJ9
A
3755 3767Right-handed alpha
Helix 91
AK1
A
3773 3780Right-handed alpha
Helix 92
AK2
A
3796 3807Right-handed alpha
Helix 93
AK3
A
3818 3836Right-handed alpha
Helix 94
AK4
A
3844 3846Right-handed 310
Helix 95
AK5
A
3847 3861Right-handed alpha
Helix 96
AK6
A
3885 3891Right-handed alpha
Helix 97
AK7
A
3902 3913Right-handed alpha
Helix 98
AK8
A
3923 3943Right-handed alpha
Helix 99
AK9
A
3957 3975Right-handed alpha
Helix 100
AL1
A
3981 3992Right-handed alpha
Helix 101
AL2
A
4000 4015Right-handed alpha
Helix 102
AL3
A
4037 4052Right-handed alpha
Helix 103
AL4
A
4057 4062Right-handed alpha
Helix 104
AL5
A
4066 4091Right-handed alpha
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There are 15 sheets in PDB entry 9DKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1569 1574first strand
Strand 2
A
1578 1584anti-parallel
Strand 3
A
1589 1597anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1733 1736first strand
Strand 2
A
1747 1751anti-parallel
Strand 3
A
1754 1757anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1817 1821first strand
Strand 2
A
1844 1848parallel
Strand 3
A
1893 1898parallel
Strand 4
A
1791 1795parallel
Strand 5
A
1916 1920parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1878 1881first strand
Strand 2
A
1884 1887anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2098 2104first strand
Strand 2
A
2148 2155parallel
Strand 3
A
2190 2196parallel
Strand 4
A
2069 2073parallel
Strand 5
A
2211 2214parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2116 2118first strand
Strand 2
A
2125 2127anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2175 2177first strand
Strand 2
A
2183 2185anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2438 2443first strand
Strand 2
A
2481 2486parallel
Strand 3
A
2529 2535parallel
Strand 4
A
2413 2417parallel
Strand 5
A
2554 2558parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2462 2465first strand
Strand 2
A
2472 2475anti-parallel
Strand 3
A
2523 2526parallel
Strand 4
A
2514 2516anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2696 2697first strand
Strand 2
A
2705 2706anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2780 2782first strand
Strand 2
A
2813 2818parallel
Strand 3
A
2885 2891parallel
Strand 4
A
2755 2760parallel
Strand 5
A
2912 2918parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3427 3430first strand
Strand 2
A
3450 3453parallel
Strand 3
A
3494 3498parallel
Strand 4
A
3404 3408parallel
Strand 5
A
3513 3517parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3471 3473first strand
Strand 2
A
3476 3481anti-parallel
Strand 3
A
3484 3488anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3811 3815first strand
Strand 2
A
3837 3842parallel
Strand 3
A
3871 3878parallel
Strand 4
A
3785 3790parallel
Strand 5
A
3893 3896parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4020 4021first strand
Strand 2
A
4029 4030anti-parallel
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