Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DKL entry

There are 4 chains in PDB entry 9DKL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	LYS 1065
B	ARG 14	LYS 1065
C	ARG 14	LYS 1065
D	ARG 14	LYS 1065

There are200 helices in PDB entry 9DKL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	44	Right-handed alpha
Helix 2	AA2	A	81	92	Right-handed alpha
Helix 3	AA3	A	96	123	Right-handed alpha
Helix 4	AA4	A	136	160	Right-handed alpha
Helix 5	AA5	A	163	168	Right-handed alpha
Helix 6	AA6	A	169	188	Right-handed alpha
Helix 7	AA7	A	195	197	Right-handed 310
Helix 8	AA8	A	198	203	Right-handed alpha
Helix 9	AA9	A	205	213	Right-handed alpha
Helix 10	AB1	A	218	249	Right-handed alpha
Helix 11	AB2	A	250	254	Right-handed 310
Helix 12	AB3	A	262	275	Right-handed alpha
Helix 13	AB4	A	286	303	Right-handed alpha
Helix 14	AB5	A	307	317	Right-handed alpha
Helix 15	AB6	A	341	353	Right-handed alpha
Helix 16	AB7	A	373	383	Right-handed alpha
Helix 17	AB8	A	396	403	Right-handed alpha
Helix 18	AB9	A	421	440	Right-handed alpha
Helix 19	AC1	A	451	453	Right-handed 310
Helix 20	AC2	A	454	461	Right-handed alpha
Helix 21	AC3	A	475	489	Right-handed alpha
Helix 22	AC4	A	491	500	Right-handed alpha
Helix 23	AC5	A	512	524	Right-handed alpha
Helix 24	AC6	A	532	536	Right-handed 310
Helix 25	AC7	A	539	550	Right-handed alpha
Helix 26	AC8	A	592	597	Right-handed alpha
Helix 27	AC9	A	597	602	Right-handed alpha
Helix 28	AD1	A	603	607	Right-handed 310
Helix 29	AD2	A	612	616	Right-handed 310
Helix 30	AD3	A	721	725	Right-handed 310
Helix 31	AD4	A	728	735	Right-handed alpha
Helix 32	AD5	A	756	761	Right-handed alpha
Helix 33	AD6	A	762	765	Right-handed 310
Helix 34	AD7	A	769	773	Right-handed 310
Helix 35	AD8	A	781	793	Right-handed alpha
Helix 36	AD9	A	807	814	Right-handed alpha
Helix 37	AE1	A	815	819	Right-handed 310
Helix 38	AE2	A	839	852	Right-handed alpha
Helix 39	AE3	A	882	886	Right-handed 310
Helix 40	AE4	A	894	902	Right-handed 310
Helix 41	AE5	A	912	915	Right-handed 310
Helix 42	AE6	A	916	921	Right-handed alpha
Helix 43	AE7	A	928	931	Right-handed 310
Helix 44	AE8	A	932	940	Right-handed alpha
Helix 45	AE9	A	940	953	Right-handed alpha
Helix 46	AF1	A	956	965	Right-handed alpha
Helix 47	AF2	A	975	980	Right-handed alpha
Helix 48	AF3	A	981	983	Right-handed 310
Helix 49	AF4	A	997	1002	Right-handed alpha
Helix 50	AF5	A	1005	1018	Right-handed alpha
Helix 51	AF6	B	16	44	Right-handed alpha
Helix 52	AF7	B	81	92	Right-handed alpha
Helix 53	AF8	B	96	123	Right-handed alpha
Helix 54	AF9	B	136	160	Right-handed alpha
Helix 55	AG1	B	163	168	Right-handed alpha
Helix 56	AG2	B	169	188	Right-handed alpha
Helix 57	AG3	B	195	197	Right-handed 310
Helix 58	AG4	B	198	203	Right-handed alpha
Helix 59	AG5	B	205	213	Right-handed alpha
Helix 60	AG6	B	218	249	Right-handed alpha
Helix 61	AG7	B	250	254	Right-handed 310
Helix 62	AG8	B	262	275	Right-handed alpha
Helix 63	AG9	B	286	303	Right-handed alpha
Helix 64	AH1	B	307	317	Right-handed alpha
Helix 65	AH2	B	341	353	Right-handed alpha
Helix 66	AH3	B	373	383	Right-handed alpha
Helix 67	AH4	B	396	403	Right-handed alpha
Helix 68	AH5	B	421	440	Right-handed alpha
Helix 69	AH6	B	451	453	Right-handed 310
Helix 70	AH7	B	454	461	Right-handed alpha
Helix 71	AH8	B	475	489	Right-handed alpha
Helix 72	AH9	B	491	500	Right-handed alpha
Helix 73	AI1	B	512	524	Right-handed alpha
Helix 74	AI2	B	532	536	Right-handed 310
Helix 75	AI3	B	539	550	Right-handed alpha
Helix 76	AI4	B	592	597	Right-handed alpha
Helix 77	AI5	B	597	602	Right-handed alpha
Helix 78	AI6	B	603	607	Right-handed 310
Helix 79	AI7	B	612	616	Right-handed 310
Helix 80	AI8	B	721	725	Right-handed 310
Helix 81	AI9	B	728	735	Right-handed alpha
Helix 82	AJ1	B	756	761	Right-handed alpha
Helix 83	AJ2	B	762	765	Right-handed 310
Helix 84	AJ3	B	769	773	Right-handed 310
Helix 85	AJ4	B	781	793	Right-handed alpha
Helix 86	AJ5	B	807	814	Right-handed alpha
Helix 87	AJ6	B	815	819	Right-handed 310
Helix 88	AJ7	B	839	852	Right-handed alpha
Helix 89	AJ8	B	882	886	Right-handed 310
Helix 90	AJ9	B	894	902	Right-handed 310
Helix 91	AK1	B	912	915	Right-handed 310
Helix 92	AK2	B	916	921	Right-handed alpha
Helix 93	AK3	B	928	931	Right-handed 310
Helix 94	AK4	B	932	940	Right-handed alpha
Helix 95	AK5	B	940	953	Right-handed alpha
Helix 96	AK6	B	956	965	Right-handed alpha
Helix 97	AK7	B	975	980	Right-handed alpha
Helix 98	AK8	B	981	983	Right-handed 310
Helix 99	AK9	B	997	1002	Right-handed alpha
Helix 100	AL1	B	1005	1018	Right-handed alpha
Helix 101	AL2	C	16	44	Right-handed alpha
Helix 102	AL3	C	81	92	Right-handed alpha
Helix 103	AL4	C	96	123	Right-handed alpha
Helix 104	AL5	C	136	160	Right-handed alpha
Helix 105	AL6	C	163	168	Right-handed alpha
Helix 106	AL7	C	169	188	Right-handed alpha
Helix 107	AL8	C	195	197	Right-handed 310
Helix 108	AL9	C	198	203	Right-handed alpha
Helix 109	AM1	C	205	213	Right-handed alpha
Helix 110	AM2	C	218	249	Right-handed alpha
Helix 111	AM3	C	250	254	Right-handed 310
Helix 112	AM4	C	262	275	Right-handed alpha
Helix 113	AM5	C	286	303	Right-handed alpha
Helix 114	AM6	C	307	317	Right-handed alpha
Helix 115	AM7	C	341	353	Right-handed alpha
Helix 116	AM8	C	373	383	Right-handed alpha
Helix 117	AM9	C	396	403	Right-handed alpha
Helix 118	AN1	C	421	440	Right-handed alpha
Helix 119	AN2	C	451	453	Right-handed 310
Helix 120	AN3	C	454	461	Right-handed alpha
Helix 121	AN4	C	475	489	Right-handed alpha
Helix 122	AN5	C	491	500	Right-handed alpha
Helix 123	AN6	C	512	524	Right-handed alpha
Helix 124	AN7	C	532	536	Right-handed 310
Helix 125	AN8	C	539	550	Right-handed alpha
Helix 126	AN9	C	592	597	Right-handed alpha
Helix 127	AO1	C	597	602	Right-handed alpha
Helix 128	AO2	C	603	607	Right-handed 310
Helix 129	AO3	C	612	616	Right-handed 310
Helix 130	AO4	C	721	725	Right-handed 310
Helix 131	AO5	C	728	735	Right-handed alpha
Helix 132	AO6	C	756	761	Right-handed alpha
Helix 133	AO7	C	762	765	Right-handed 310
Helix 134	AO8	C	769	773	Right-handed 310
Helix 135	AO9	C	781	793	Right-handed alpha
Helix 136	AP1	C	807	814	Right-handed alpha
Helix 137	AP2	C	815	819	Right-handed 310
Helix 138	AP3	C	839	852	Right-handed alpha
Helix 139	AP4	C	882	886	Right-handed 310
Helix 140	AP5	C	894	902	Right-handed 310
Helix 141	AP6	C	912	915	Right-handed 310
Helix 142	AP7	C	916	921	Right-handed alpha
Helix 143	AP8	C	928	931	Right-handed 310
Helix 144	AP9	C	932	940	Right-handed alpha
Helix 145	AQ1	C	940	953	Right-handed alpha
Helix 146	AQ2	C	956	965	Right-handed alpha
Helix 147	AQ3	C	975	980	Right-handed alpha
Helix 148	AQ4	C	981	983	Right-handed 310
Helix 149	AQ5	C	997	1002	Right-handed alpha
Helix 150	AQ6	C	1005	1018	Right-handed alpha
Helix 151	AQ7	D	16	44	Right-handed alpha
Helix 152	AQ8	D	81	92	Right-handed alpha
Helix 153	AQ9	D	96	123	Right-handed alpha
Helix 154	AR1	D	136	160	Right-handed alpha
Helix 155	AR2	D	163	168	Right-handed alpha
Helix 156	AR3	D	169	188	Right-handed alpha
Helix 157	AR4	D	195	197	Right-handed 310
Helix 158	AR5	D	198	203	Right-handed alpha
Helix 159	AR6	D	205	213	Right-handed alpha
Helix 160	AR7	D	218	249	Right-handed alpha
Helix 161	AR8	D	250	254	Right-handed 310
Helix 162	AR9	D	262	275	Right-handed alpha
Helix 163	AS1	D	286	303	Right-handed alpha
Helix 164	AS2	D	307	317	Right-handed alpha
Helix 165	AS3	D	341	353	Right-handed alpha
Helix 166	AS4	D	373	383	Right-handed alpha
Helix 167	AS5	D	396	403	Right-handed alpha
Helix 168	AS6	D	421	440	Right-handed alpha
Helix 169	AS7	D	451	453	Right-handed 310
Helix 170	AS8	D	454	461	Right-handed alpha
Helix 171	AS9	D	475	489	Right-handed alpha
Helix 172	AT1	D	491	500	Right-handed alpha
Helix 173	AT2	D	512	524	Right-handed alpha
Helix 174	AT3	D	532	536	Right-handed 310
Helix 175	AT4	D	539	550	Right-handed alpha
Helix 176	AT5	D	592	597	Right-handed alpha
Helix 177	AT6	D	597	602	Right-handed alpha
Helix 178	AT7	D	603	607	Right-handed 310
Helix 179	AT8	D	612	616	Right-handed 310
Helix 180	AT9	D	721	725	Right-handed 310
Helix 181	AU1	D	728	735	Right-handed alpha
Helix 182	AU2	D	756	761	Right-handed alpha
Helix 183	AU3	D	762	765	Right-handed 310
Helix 184	AU4	D	769	773	Right-handed 310
Helix 185	AU5	D	781	793	Right-handed alpha
Helix 186	AU6	D	807	814	Right-handed alpha
Helix 187	AU7	D	815	819	Right-handed 310
Helix 188	AU8	D	839	852	Right-handed alpha
Helix 189	AU9	D	882	886	Right-handed 310
Helix 190	AV1	D	894	902	Right-handed 310
Helix 191	AV2	D	912	915	Right-handed 310
Helix 192	AV3	D	916	921	Right-handed alpha
Helix 193	AV4	D	928	931	Right-handed 310
Helix 194	AV5	D	932	940	Right-handed alpha
Helix 195	AV6	D	940	953	Right-handed alpha
Helix 196	AV7	D	956	965	Right-handed alpha
Helix 197	AV8	D	975	980	Right-handed alpha
Helix 198	AV9	D	981	983	Right-handed 310
Helix 199	AW1	D	997	1002	Right-handed alpha
Helix 200	AW2	D	1005	1018	Right-handed alpha

There are 20 sheets in PDB entry 9DKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	191	192	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	391	first strand
Strand 2	A	363	368	parallel
Strand 3	A	333	338	parallel
Strand 4	A	410	414	parallel
Strand 5	A	445	449	parallel
Strand 6	A	471	474	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	554	560	anti-parallel
Strand 4	A	569	572	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	802	first strand
Strand 2	A	776	780	parallel
Strand 3	A	741	746	parallel
Strand 4	A	821	826	parallel
Strand 5	A	888	892	parallel
Strand 6	A	924	926	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	991	first strand
Strand 2	A	1058	1063	anti-parallel
Strand 3	A	1020	1027	anti-parallel
Strand 4	A	1041	1045	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	191	192	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	391	first strand
Strand 2	B	363	368	parallel
Strand 3	B	333	338	parallel
Strand 4	B	410	414	parallel
Strand 5	B	445	449	parallel
Strand 6	B	471	474	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	554	560	anti-parallel
Strand 4	B	569	572	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	802	first strand
Strand 2	B	776	780	parallel
Strand 3	B	741	746	parallel
Strand 4	B	821	826	parallel
Strand 5	B	888	892	parallel
Strand 6	B	924	926	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	991	first strand
Strand 2	B	1058	1063	anti-parallel
Strand 3	B	1020	1027	anti-parallel
Strand 4	B	1041	1045	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	191	192	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	391	first strand
Strand 2	C	363	368	parallel
Strand 3	C	333	338	parallel
Strand 4	C	410	414	parallel
Strand 5	C	445	449	parallel
Strand 6	C	471	474	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	530	first strand
Strand 2	C	585	590	anti-parallel
Strand 3	C	554	560	anti-parallel
Strand 4	C	569	572	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	802	first strand
Strand 2	C	776	780	parallel
Strand 3	C	741	746	parallel
Strand 4	C	821	826	parallel
Strand 5	C	888	892	parallel
Strand 6	C	924	926	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	986	991	first strand
Strand 2	C	1058	1063	anti-parallel
Strand 3	C	1020	1027	anti-parallel
Strand 4	C	1041	1045	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	191	192	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	391	first strand
Strand 2	D	363	368	parallel
Strand 3	D	333	338	parallel
Strand 4	D	410	414	parallel
Strand 5	D	445	449	parallel
Strand 6	D	471	474	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	530	first strand
Strand 2	D	585	590	anti-parallel
Strand 3	D	554	560	anti-parallel
Strand 4	D	569	572	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	802	first strand
Strand 2	D	776	780	parallel
Strand 3	D	741	746	parallel
Strand 4	D	821	826	parallel
Strand 5	D	888	892	parallel
Strand 6	D	924	926	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	986	991	first strand
Strand 2	D	1058	1063	anti-parallel
Strand 3	D	1020	1027	anti-parallel
Strand 4	D	1041	1045	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DKL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKL