Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DKN entry

There are 4 chains in PDB entry 9DKN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	LYS 1065
B	ARG 14	LYS 1065
C	ARG 14	LYS 1065
D	ARG 14	LYS 1065

There are175 helices in PDB entry 9DKN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	44	Right-handed alpha
Helix 2	AA2	A	80	94	Right-handed alpha
Helix 3	AA3	A	96	123	Right-handed alpha
Helix 4	AA4	A	139	159	Right-handed alpha
Helix 5	AA5	A	162	168	Right-handed alpha
Helix 6	AA6	A	169	189	Right-handed alpha
Helix 7	AA7	A	195	204	Right-handed 310
Helix 8	AA8	A	205	213	Right-handed alpha
Helix 9	AA9	A	218	249	Right-handed alpha
Helix 10	AB1	A	250	254	Right-handed 310
Helix 11	AB2	A	262	275	Right-handed alpha
Helix 12	AB3	A	286	317	Right-handed alpha
Helix 13	AB4	A	341	353	Right-handed alpha
Helix 14	AB5	A	373	383	Right-handed alpha
Helix 15	AB6	A	396	403	Right-handed alpha
Helix 16	AB7	A	421	440	Right-handed alpha
Helix 17	AB8	A	454	461	Right-handed alpha
Helix 18	AB9	A	475	489	Right-handed alpha
Helix 19	AC1	A	491	500	Right-handed alpha
Helix 20	AC2	A	512	523	Right-handed alpha
Helix 21	AC3	A	532	536	Right-handed 310
Helix 22	AC4	A	539	550	Right-handed alpha
Helix 23	AC5	A	592	597	Right-handed alpha
Helix 24	AC6	A	597	602	Right-handed alpha
Helix 25	AC7	A	721	725	Right-handed 310
Helix 26	AC8	A	728	735	Right-handed alpha
Helix 27	AC9	A	756	761	Right-handed alpha
Helix 28	AD1	A	762	765	Right-handed 310
Helix 29	AD2	A	769	773	Right-handed 310
Helix 30	AD3	A	781	793	Right-handed alpha
Helix 31	AD4	A	807	814	Right-handed alpha
Helix 32	AD5	A	815	819	Right-handed 310
Helix 33	AD6	A	839	851	Right-handed alpha
Helix 34	AD7	A	882	886	Right-handed 310
Helix 35	AD8	A	894	896	Right-handed 310
Helix 36	AD9	A	897	902	Right-handed alpha
Helix 37	AE1	A	912	915	Right-handed 310
Helix 38	AE2	A	916	921	Right-handed alpha
Helix 39	AE3	A	928	940	Right-handed alpha
Helix 40	AE4	A	942	953	Right-handed alpha
Helix 41	AE5	A	956	965	Right-handed alpha
Helix 42	AE6	A	975	980	Right-handed alpha
Helix 43	AE7	A	997	1002	Right-handed alpha
Helix 44	AE8	A	1005	1018	Right-handed alpha
Helix 45	AE9	B	16	44	Right-handed alpha
Helix 46	AF1	B	80	94	Right-handed alpha
Helix 47	AF2	B	96	123	Right-handed alpha
Helix 48	AF3	B	139	159	Right-handed alpha
Helix 49	AF4	B	162	168	Right-handed alpha
Helix 50	AF5	B	169	189	Right-handed alpha
Helix 51	AF6	B	195	204	Right-handed 310
Helix 52	AF7	B	205	213	Right-handed alpha
Helix 53	AF8	B	218	249	Right-handed alpha
Helix 54	AF9	B	250	254	Right-handed 310
Helix 55	AG1	B	262	275	Right-handed alpha
Helix 56	AG2	B	286	317	Right-handed alpha
Helix 57	AG3	B	341	353	Right-handed alpha
Helix 58	AG4	B	373	383	Right-handed alpha
Helix 59	AG5	B	396	403	Right-handed alpha
Helix 60	AG6	B	421	440	Right-handed alpha
Helix 61	AG7	B	454	461	Right-handed alpha
Helix 62	AG8	B	475	489	Right-handed alpha
Helix 63	AG9	B	491	500	Right-handed alpha
Helix 64	AH1	B	512	523	Right-handed alpha
Helix 65	AH2	B	532	536	Right-handed 310
Helix 66	AH3	B	539	550	Right-handed alpha
Helix 67	AH4	B	592	597	Right-handed alpha
Helix 68	AH5	B	597	602	Right-handed alpha
Helix 69	AH6	B	721	725	Right-handed 310
Helix 70	AH7	B	728	735	Right-handed alpha
Helix 71	AH8	B	756	761	Right-handed alpha
Helix 72	AH9	B	762	765	Right-handed 310
Helix 73	AI1	B	769	773	Right-handed 310
Helix 74	AI2	B	781	793	Right-handed alpha
Helix 75	AI3	B	807	814	Right-handed alpha
Helix 76	AI4	B	815	819	Right-handed 310
Helix 77	AI5	B	839	851	Right-handed alpha
Helix 78	AI6	B	882	886	Right-handed 310
Helix 79	AI7	B	894	896	Right-handed 310
Helix 80	AI8	B	897	902	Right-handed alpha
Helix 81	AI9	B	912	915	Right-handed 310
Helix 82	AJ1	B	916	921	Right-handed alpha
Helix 83	AJ2	B	928	940	Right-handed alpha
Helix 84	AJ3	B	942	953	Right-handed alpha
Helix 85	AJ4	B	956	965	Right-handed alpha
Helix 86	AJ5	B	975	980	Right-handed alpha
Helix 87	AJ6	B	997	1002	Right-handed alpha
Helix 88	AJ7	B	1005	1018	Right-handed alpha
Helix 89	AJ8	C	16	44	Right-handed alpha
Helix 90	AJ9	C	80	94	Right-handed alpha
Helix 91	AK1	C	96	123	Right-handed alpha
Helix 92	AK2	C	139	159	Right-handed alpha
Helix 93	AK3	C	162	168	Right-handed alpha
Helix 94	AK4	C	169	189	Right-handed alpha
Helix 95	AK5	C	195	204	Right-handed 310
Helix 96	AK6	C	205	213	Right-handed alpha
Helix 97	AK7	C	218	249	Right-handed alpha
Helix 98	AK8	C	250	254	Right-handed 310
Helix 99	AK9	C	262	275	Right-handed alpha
Helix 100	AL1	C	286	317	Right-handed alpha
Helix 101	AL2	C	341	353	Right-handed alpha
Helix 102	AL3	C	373	383	Right-handed alpha
Helix 103	AL4	C	396	403	Right-handed alpha
Helix 104	AL5	C	421	440	Right-handed alpha
Helix 105	AL6	C	454	461	Right-handed alpha
Helix 106	AL7	C	475	489	Right-handed alpha
Helix 107	AL8	C	491	500	Right-handed alpha
Helix 108	AL9	C	512	523	Right-handed alpha
Helix 109	AM1	C	532	536	Right-handed 310
Helix 110	AM2	C	539	550	Right-handed alpha
Helix 111	AM3	C	592	597	Right-handed alpha
Helix 112	AM4	C	597	602	Right-handed alpha
Helix 113	AM5	C	721	725	Right-handed 310
Helix 114	AM6	C	728	735	Right-handed alpha
Helix 115	AM7	C	756	761	Right-handed alpha
Helix 116	AM8	C	762	765	Right-handed 310
Helix 117	AM9	C	769	773	Right-handed 310
Helix 118	AN1	C	781	793	Right-handed alpha
Helix 119	AN2	C	807	814	Right-handed alpha
Helix 120	AN3	C	815	819	Right-handed 310
Helix 121	AN4	C	839	851	Right-handed alpha
Helix 122	AN5	C	882	886	Right-handed 310
Helix 123	AN6	C	894	901	Right-handed 310
Helix 124	AN7	C	912	915	Right-handed 310
Helix 125	AN8	C	916	921	Right-handed alpha
Helix 126	AN9	C	928	940	Right-handed alpha
Helix 127	AO1	C	942	953	Right-handed alpha
Helix 128	AO2	C	956	965	Right-handed alpha
Helix 129	AO3	C	975	980	Right-handed alpha
Helix 130	AO4	C	997	1002	Right-handed alpha
Helix 131	AO5	C	1005	1018	Right-handed alpha
Helix 132	AO6	D	16	44	Right-handed alpha
Helix 133	AO7	D	80	94	Right-handed alpha
Helix 134	AO8	D	96	123	Right-handed alpha
Helix 135	AO9	D	139	159	Right-handed alpha
Helix 136	AP1	D	162	168	Right-handed alpha
Helix 137	AP2	D	169	189	Right-handed alpha
Helix 138	AP3	D	195	204	Right-handed 310
Helix 139	AP4	D	205	213	Right-handed alpha
Helix 140	AP5	D	218	249	Right-handed alpha
Helix 141	AP6	D	250	254	Right-handed 310
Helix 142	AP7	D	262	275	Right-handed alpha
Helix 143	AP8	D	286	317	Right-handed alpha
Helix 144	AP9	D	341	353	Right-handed alpha
Helix 145	AQ1	D	373	383	Right-handed alpha
Helix 146	AQ2	D	396	403	Right-handed alpha
Helix 147	AQ3	D	421	440	Right-handed alpha
Helix 148	AQ4	D	454	461	Right-handed alpha
Helix 149	AQ5	D	475	489	Right-handed alpha
Helix 150	AQ6	D	491	500	Right-handed alpha
Helix 151	AQ7	D	512	523	Right-handed alpha
Helix 152	AQ8	D	532	536	Right-handed 310
Helix 153	AQ9	D	539	550	Right-handed alpha
Helix 154	AR1	D	592	597	Right-handed alpha
Helix 155	AR2	D	597	602	Right-handed alpha
Helix 156	AR3	D	721	725	Right-handed 310
Helix 157	AR4	D	728	735	Right-handed alpha
Helix 158	AR5	D	756	761	Right-handed alpha
Helix 159	AR6	D	762	765	Right-handed 310
Helix 160	AR7	D	769	773	Right-handed 310
Helix 161	AR8	D	781	793	Right-handed alpha
Helix 162	AR9	D	807	814	Right-handed alpha
Helix 163	AS1	D	815	819	Right-handed 310
Helix 164	AS2	D	839	851	Right-handed alpha
Helix 165	AS3	D	882	886	Right-handed 310
Helix 166	AS4	D	894	896	Right-handed 310
Helix 167	AS5	D	897	902	Right-handed alpha
Helix 168	AS6	D	912	915	Right-handed 310
Helix 169	AS7	D	916	921	Right-handed alpha
Helix 170	AS8	D	928	940	Right-handed alpha
Helix 171	AS9	D	942	953	Right-handed alpha
Helix 172	AT1	D	956	965	Right-handed alpha
Helix 173	AT2	D	975	980	Right-handed alpha
Helix 174	AT3	D	997	1002	Right-handed alpha
Helix 175	AT4	D	1005	1018	Right-handed alpha

There are 20 sheets in PDB entry 9DKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	391	first strand
Strand 2	A	363	368	parallel
Strand 3	A	333	338	parallel
Strand 4	A	410	414	parallel
Strand 5	A	445	449	parallel
Strand 6	A	471	474	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	585	590	anti-parallel
Strand 3	A	554	560	anti-parallel
Strand 4	A	569	572	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	971	972	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	802	first strand
Strand 2	A	776	780	parallel
Strand 3	A	741	746	parallel
Strand 4	A	821	826	parallel
Strand 5	A	888	892	parallel
Strand 6	A	924	926	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	991	first strand
Strand 2	A	1058	1063	anti-parallel
Strand 3	A	1020	1027	anti-parallel
Strand 4	A	1041	1045	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	391	first strand
Strand 2	B	363	368	parallel
Strand 3	B	333	338	parallel
Strand 4	B	410	414	parallel
Strand 5	B	445	449	parallel
Strand 6	B	471	474	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	554	560	anti-parallel
Strand 4	B	569	572	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	709	first strand
Strand 2	B	971	972	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	802	first strand
Strand 2	B	776	780	parallel
Strand 3	B	741	746	parallel
Strand 4	B	821	826	parallel
Strand 5	B	888	892	parallel
Strand 6	B	924	926	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	986	991	first strand
Strand 2	B	1058	1063	anti-parallel
Strand 3	B	1020	1027	anti-parallel
Strand 4	B	1041	1045	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	391	first strand
Strand 2	C	363	368	parallel
Strand 3	C	333	338	parallel
Strand 4	C	410	414	parallel
Strand 5	C	445	449	parallel
Strand 6	C	471	474	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	530	first strand
Strand 2	C	585	590	anti-parallel
Strand 3	C	554	560	anti-parallel
Strand 4	C	569	572	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	971	972	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	802	first strand
Strand 2	C	776	780	parallel
Strand 3	C	741	746	parallel
Strand 4	C	821	826	parallel
Strand 5	C	888	892	parallel
Strand 6	C	924	926	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	986	991	first strand
Strand 2	C	1058	1063	anti-parallel
Strand 3	C	1020	1027	anti-parallel
Strand 4	C	1041	1045	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	391	first strand
Strand 2	D	363	368	parallel
Strand 3	D	333	338	parallel
Strand 4	D	410	414	parallel
Strand 5	D	445	449	parallel
Strand 6	D	471	474	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	530	first strand
Strand 2	D	585	590	anti-parallel
Strand 3	D	554	560	anti-parallel
Strand 4	D	569	572	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	708	709	first strand
Strand 2	D	971	972	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	802	first strand
Strand 2	D	776	780	parallel
Strand 3	D	741	746	parallel
Strand 4	D	821	826	parallel
Strand 5	D	888	892	parallel
Strand 6	D	924	926	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	986	991	first strand
Strand 2	D	1058	1063	anti-parallel
Strand 3	D	1020	1027	anti-parallel
Strand 4	D	1041	1045	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DKN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKN