Analysis of interatomic Contacts of Structural Units in PDB entry:
9DKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DKR entry

There are 4 chains in PDB entry 9DKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9LEU 357
B
 ASP 11LEU 357
C
 SER 28THR 104
D
 SER 28THR 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9DKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
74 84Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
96 106Right-handed alpha
Helix 6
AA6
A
115 123Right-handed 310
Helix 7
AA7
A
162 171Right-handed alpha
Helix 8
AA8
A
191 216Right-handed alpha
Helix 9
AA9
A
235 245Right-handed alpha
Helix 10
AB1
A
246 248Right-handed 310
Helix 11
AB2
A
249 255Right-handed alpha
Helix 12
AB3
A
260 298Right-handed alpha
Helix 13
AB4
A
300 305Right-handed 310
Helix 14
AB5
A
308 326Right-handed alpha
Helix 15
AB6
A
328 355Right-handed alpha
Helix 16
AB7
B
18 31Right-handed alpha
Helix 17
AB8
B
34 39Right-handed alpha
Helix 18
AB9
B
74 84Right-handed alpha
Helix 19
AC1
B
93 95Right-handed 310
Helix 20
AC2
B
96 106Right-handed alpha
Helix 21
AC3
B
115 123Right-handed 310
Helix 22
AC4
B
162 171Right-handed alpha
Helix 23
AC5
B
191 197Right-handed alpha
Helix 24
AC6
B
197 216Right-handed alpha
Helix 25
AC7
B
235 245Right-handed alpha
Helix 26
AC8
B
246 248Right-handed 310
Helix 27
AC9
B
249 255Right-handed alpha
Helix 28
AD1
B
260 298Right-handed alpha
Helix 29
AD2
B
300 304Right-handed 310
Helix 30
AD3
B
308 326Right-handed alpha
Helix 31
AD4
B
328 356Right-handed alpha
Helix 32
AD5
C
29 38Right-handed alpha
Helix 33
AD6
C
39 41Right-handed 310
Helix 34
AD7
C
61 76Right-handed alpha
Helix 35
AD8
C
80 84Right-handed 310
Helix 36
AD9
C
85 90Right-handed alpha
Helix 37
AE1
C
91 103Right-handed alpha
Helix 38
AE2
D
29 38Right-handed alpha
Helix 39
AE3
D
39 41Right-handed 310
Helix 40
AE4
D
61 76Right-handed alpha
Helix 41
AE5
D
80 84Right-handed 310
Helix 42
AE6
D
85 90Right-handed alpha
Helix 43
AE7
D
91 102Right-handed alpha
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There are 4 sheets in PDB entry 9DKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
226 232anti-parallel
Strand 4
A
218 223anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
182 187anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
133 140anti-parallel
Strand 5
A
146 150anti-parallel
Strand 6
A
157 161anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
226 232anti-parallel
Strand 4
B
218 223anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
108 114anti-parallel
Strand 4
B
133 140anti-parallel
Strand 5
B
146 150anti-parallel
Strand 6
B
157 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il