Analysis of interatomic Contacts of Structural Units in PDB entry:
9DL0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DL0 entry

There are 6 chains in PDB entry 9DL0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LYS 227
G	ILE 2021	SER 2112
H	GLU 4	LYS 227
I	SER 2020	GLY 2117
Y	ASP 2	GLY 213
Z	ASP 2	GLY 213

There are 26 helices in PDB entry 9DL0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	77	79	Right-handed 310
Helix 3	AA3	A	90	94	Right-handed 310
Helix 4	AA4	A	169	171	Right-handed 310
Helix 5	AA5	A	200	202	Right-handed 310
Helix 6	AA6	A	214	217	Right-handed 310
Helix 7	AA7	G	2022	2040	Right-handed alpha
Helix 8	AA8	G	2043	2061	Right-handed alpha
Helix 9	AA9	G	2064	2092	Right-handed alpha
Helix 10	AB1	G	2093	2112	Right-handed alpha
Helix 11	AB2	H	31	34	Right-handed 310
Helix 12	AB3	H	77	79	Right-handed 310
Helix 13	AB4	H	90	94	Right-handed 310
Helix 14	AB5	H	169	171	Right-handed 310
Helix 15	AB6	H	200	202	Right-handed 310
Helix 16	AB7	H	214	217	Right-handed 310
Helix 17	AB8	I	2022	2040	Right-handed alpha
Helix 18	AB9	I	2043	2060	Right-handed alpha
Helix 19	AC1	I	2064	2092	Right-handed alpha
Helix 20	AC2	I	2093	2115	Right-handed alpha
Helix 21	AC3	Y	80	84	Right-handed 310
Helix 22	AC4	Y	122	127	Right-handed alpha
Helix 23	AC5	Y	184	189	Right-handed alpha
Helix 24	AC6	Z	80	84	Right-handed 310
Helix 25	AC7	Z	122	127	Right-handed alpha
Helix 26	AC8	Z	184	189	Right-handed alpha

There are 22 sheets in PDB entry 9DL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	120	124	parallel
Strand 3	A	95	104	anti-parallel
Strand 4	A	36	42	anti-parallel
Strand 5	A	49	55	anti-parallel
Strand 6	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	120	124	parallel
Strand 3	A	95	104	anti-parallel
Strand 4	A	111	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	148	158	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	148	158	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	207	213	anti-parallel
Strand 3	A	218	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	120	124	parallel
Strand 3	H	95	104	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	120	124	parallel
Strand 3	H	95	104	anti-parallel
Strand 4	H	111	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	182	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	167	first strand
Strand 2	H	207	213	anti-parallel
Strand 3	H	218	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	5	8	first strand
Strand 2	Y	20	26	anti-parallel
Strand 3	Y	71	76	anti-parallel
Strand 4	Y	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	15	first strand
Strand 2	Y	103	108	parallel
Strand 3	Y	85	91	anti-parallel
Strand 4	Y	34	39	anti-parallel
Strand 5	Y	46	50	anti-parallel
Strand 6	Y	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	11	15	first strand
Strand 2	Y	103	108	parallel
Strand 3	Y	85	91	anti-parallel
Strand 4	Y	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	115	119	first strand
Strand 2	Y	130	140	anti-parallel
Strand 3	Y	174	183	anti-parallel
Strand 4	Y	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	154	155	first strand
Strand 2	Y	146	151	anti-parallel
Strand 3	Y	192	198	anti-parallel
Strand 4	Y	206	211	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	5	8	first strand
Strand 2	Z	20	26	anti-parallel
Strand 3	Z	71	76	anti-parallel
Strand 4	Z	63	68	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	15	first strand
Strand 2	Z	103	108	parallel
Strand 3	Z	85	91	anti-parallel
Strand 4	Z	34	39	anti-parallel
Strand 5	Z	46	50	anti-parallel
Strand 6	Z	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	11	15	first strand
Strand 2	Z	103	108	parallel
Strand 3	Z	85	91	anti-parallel
Strand 4	Z	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	115	119	first strand
Strand 2	Z	130	140	anti-parallel
Strand 3	Z	174	183	anti-parallel
Strand 4	Z	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	154	155	first strand
Strand 2	Z	146	151	anti-parallel
Strand 3	Z	192	198	anti-parallel
Strand 4	Z	206	211	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DL0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DL0