Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DLB entry

There are 4 chains in PDB entry 9DLB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 474
B	MET 1	LYS 474
C	MET 1	ASP 472
D	MET 1	LYS 474

There are 67 helices in PDB entry 9DLB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	58	Right-handed alpha
Helix 2	AA2	A	59	77	Right-handed alpha
Helix 3	AA3	A	77	90	Right-handed alpha
Helix 4	AA4	A	92	116	Right-handed alpha
Helix 5	AA5	A	156	169	Right-handed alpha
Helix 6	AA6	A	181	196	Right-handed alpha
Helix 7	AA7	A	230	242	Right-handed alpha
Helix 8	AA8	A	263	277	Right-handed alpha
Helix 9	AA9	A	278	281	Right-handed 310
Helix 10	AB1	A	295	309	Right-handed alpha
Helix 11	AB2	A	326	343	Right-handed alpha
Helix 12	AB3	A	370	374	Right-handed 310
Helix 13	AB4	A	389	399	Right-handed alpha
Helix 14	AB5	A	412	423	Right-handed alpha
Helix 15	AB6	A	455	463	Right-handed alpha
Helix 16	AB7	B	37	57	Right-handed alpha
Helix 17	AB8	B	59	77	Right-handed alpha
Helix 18	AB9	B	77	90	Right-handed alpha
Helix 19	AC1	B	92	115	Right-handed alpha
Helix 20	AC2	B	128	132	Right-handed 310
Helix 21	AC3	B	156	168	Right-handed alpha
Helix 22	AC4	B	181	196	Right-handed alpha
Helix 23	AC5	B	230	242	Right-handed alpha
Helix 24	AC6	B	263	277	Right-handed alpha
Helix 25	AC7	B	278	281	Right-handed 310
Helix 26	AC8	B	295	308	Right-handed alpha
Helix 27	AC9	B	314	318	Right-handed 310
Helix 28	AD1	B	326	343	Right-handed alpha
Helix 29	AD2	B	370	374	Right-handed 310
Helix 30	AD3	B	389	399	Right-handed alpha
Helix 31	AD4	B	412	423	Right-handed alpha
Helix 32	AD5	B	446	448	Right-handed 310
Helix 33	AD6	B	455	463	Right-handed alpha
Helix 34	AD7	C	37	57	Right-handed alpha
Helix 35	AD8	C	59	77	Right-handed alpha
Helix 36	AD9	C	77	90	Right-handed alpha
Helix 37	AE1	C	92	114	Right-handed alpha
Helix 38	AE2	C	156	169	Right-handed alpha
Helix 39	AE3	C	181	195	Right-handed alpha
Helix 40	AE4	C	230	242	Right-handed alpha
Helix 41	AE5	C	263	277	Right-handed alpha
Helix 42	AE6	C	278	281	Right-handed 310
Helix 43	AE7	C	295	309	Right-handed alpha
Helix 44	AE8	C	314	318	Right-handed 310
Helix 45	AE9	C	326	343	Right-handed alpha
Helix 46	AF1	C	370	374	Right-handed 310
Helix 47	AF2	C	389	399	Right-handed alpha
Helix 48	AF3	C	412	423	Right-handed alpha
Helix 49	AF4	C	455	463	Right-handed alpha
Helix 50	AF5	D	37	57	Right-handed alpha
Helix 51	AF6	D	59	77	Right-handed alpha
Helix 52	AF7	D	77	90	Right-handed alpha
Helix 53	AF8	D	92	115	Right-handed alpha
Helix 54	AF9	D	128	132	Right-handed 310
Helix 55	AG1	D	156	168	Right-handed alpha
Helix 56	AG2	D	181	195	Right-handed alpha
Helix 57	AG3	D	208	213	Right-handed alpha
Helix 58	AG4	D	215	219	Right-handed 310
Helix 59	AG5	D	230	242	Right-handed alpha
Helix 60	AG6	D	263	276	Right-handed alpha
Helix 61	AG7	D	295	309	Right-handed alpha
Helix 62	AG8	D	314	318	Right-handed 310
Helix 63	AG9	D	326	343	Right-handed alpha
Helix 64	AH1	D	370	374	Right-handed 310
Helix 65	AH2	D	389	399	Right-handed alpha
Helix 66	AH3	D	412	423	Right-handed alpha
Helix 67	AH4	D	455	463	Right-handed alpha

There are 27 sheets in PDB entry 9DLB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	22	first strand
Strand 2	A	29	34	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	134	142	anti-parallel
Strand 3	A	471	472	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	134	142	anti-parallel
Strand 3	A	120	123	anti-parallel
Strand 4	D	119	123	anti-parallel
Strand 5	D	135	142	anti-parallel
Strand 6	D	464	471	anti-parallel
Strand 7	C	427	429	parallel
Strand 8	C	405	407	parallel
Strand 9	C	254	258	parallel
Strand 10	C	286	292	parallel
Strand 11	C	381	387	parallel
Strand 12	C	361	366	parallel
Strand 13	C	346	347	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	172	176	parallel
Strand 3	A	145	149	parallel
Strand 4	A	222	228	parallel
Strand 5	A	246	249	parallel
Strand 6	A	450	451	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	381	387	parallel
Strand 4	A	286	292	parallel
Strand 5	A	254	258	parallel
Strand 6	A	405	409	parallel
Strand 7	A	427	430	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	357	358	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	444	first strand
Strand 2	A	453	454	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	29	34	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	134	142	anti-parallel
Strand 3	B	464	468	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	134	142	anti-parallel
Strand 3	B	471	472	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	172	176	parallel
Strand 3	B	145	149	parallel
Strand 4	B	222	228	parallel
Strand 5	B	246	249	parallel
Strand 6	B	450	451	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	361	364	anti-parallel
Strand 3	B	381	387	parallel
Strand 4	B	288	292	parallel
Strand 5	B	255	258	parallel
Strand 6	B	405	409	parallel
Strand 7	B	427	430	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	357	358	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	29	35	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	135	142	anti-parallel
Strand 3	C	464	471	anti-parallel
Strand 4	D	427	430	parallel
Strand 5	D	405	409	parallel
Strand 6	D	254	258	parallel
Strand 7	D	286	292	parallel
Strand 8	D	381	387	parallel
Strand 9	D	361	366	parallel
Strand 10	D	346	347	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	172	176	parallel
Strand 3	C	145	149	parallel
Strand 4	C	222	228	parallel
Strand 5	C	246	249	parallel
Strand 6	C	450	451	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	357	358	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	403	first strand
Strand 2	C	446	447	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	29	34	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	172	175	parallel
Strand 3	D	145	149	parallel
Strand 4	D	224	228	parallel
Strand 5	D	246	249	parallel
Strand 6	D	450	451	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	357	358	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	403	first strand
Strand 2	D	446	447	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DLB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLB