Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DLC entry

There are 4 chains in PDB entry 9DLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 474
B	MET 1	LYS 474
C	MET 1	ASP 472
D	MET 1	LYS 474

There are 66 helices in PDB entry 9DLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	58	Right-handed alpha
Helix 2	AA2	A	59	77	Right-handed alpha
Helix 3	AA3	A	77	90	Right-handed alpha
Helix 4	AA4	A	92	116	Right-handed alpha
Helix 5	AA5	A	156	169	Right-handed alpha
Helix 6	AA6	A	181	196	Right-handed alpha
Helix 7	AA7	A	208	219	Right-handed alpha
Helix 8	AA8	A	230	241	Right-handed alpha
Helix 9	AA9	A	263	276	Right-handed alpha
Helix 10	AB1	A	293	308	Right-handed alpha
Helix 11	AB2	A	314	318	Right-handed 310
Helix 12	AB3	A	326	343	Right-handed alpha
Helix 13	AB4	A	370	374	Right-handed 310
Helix 14	AB5	A	389	400	Right-handed alpha
Helix 15	AB6	A	412	423	Right-handed alpha
Helix 16	AB7	A	455	463	Right-handed alpha
Helix 17	AB8	B	37	56	Right-handed alpha
Helix 18	AB9	B	59	77	Right-handed alpha
Helix 19	AC1	B	77	90	Right-handed alpha
Helix 20	AC2	B	92	115	Right-handed alpha
Helix 21	AC3	B	128	132	Right-handed 310
Helix 22	AC4	B	156	169	Right-handed alpha
Helix 23	AC5	B	181	195	Right-handed alpha
Helix 24	AC6	B	208	219	Right-handed alpha
Helix 25	AC7	B	230	241	Right-handed alpha
Helix 26	AC8	B	263	276	Right-handed alpha
Helix 27	AC9	B	293	309	Right-handed alpha
Helix 28	AD1	B	314	318	Right-handed 310
Helix 29	AD2	B	326	343	Right-handed alpha
Helix 30	AD3	B	370	374	Right-handed 310
Helix 31	AD4	B	389	400	Right-handed alpha
Helix 32	AD5	B	412	423	Right-handed alpha
Helix 33	AD6	B	455	463	Right-handed alpha
Helix 34	AD7	C	37	57	Right-handed alpha
Helix 35	AD8	C	59	77	Right-handed alpha
Helix 36	AD9	C	77	90	Right-handed alpha
Helix 37	AE1	C	92	115	Right-handed alpha
Helix 38	AE2	C	156	170	Right-handed alpha
Helix 39	AE3	C	181	195	Right-handed alpha
Helix 40	AE4	C	212	219	Right-handed alpha
Helix 41	AE5	C	230	241	Right-handed alpha
Helix 42	AE6	C	263	276	Right-handed alpha
Helix 43	AE7	C	277	281	Right-handed 310
Helix 44	AE8	C	293	309	Right-handed alpha
Helix 45	AE9	C	314	318	Right-handed 310
Helix 46	AF1	C	326	342	Right-handed alpha
Helix 47	AF2	C	389	399	Right-handed alpha
Helix 48	AF3	C	412	423	Right-handed alpha
Helix 49	AF4	C	455	463	Right-handed alpha
Helix 50	AF5	D	37	57	Right-handed alpha
Helix 51	AF6	D	59	77	Right-handed alpha
Helix 52	AF7	D	77	89	Right-handed alpha
Helix 53	AF8	D	92	114	Right-handed alpha
Helix 54	AF9	D	128	132	Right-handed 310
Helix 55	AG1	D	156	169	Right-handed alpha
Helix 56	AG2	D	181	196	Right-handed alpha
Helix 57	AG3	D	230	241	Right-handed alpha
Helix 58	AG4	D	263	276	Right-handed alpha
Helix 59	AG5	D	277	281	Right-handed 310
Helix 60	AG6	D	293	309	Right-handed alpha
Helix 61	AG7	D	314	318	Right-handed 310
Helix 62	AG8	D	326	343	Right-handed alpha
Helix 63	AG9	D	370	374	Right-handed 310
Helix 64	AH1	D	389	399	Right-handed alpha
Helix 65	AH2	D	412	423	Right-handed alpha
Helix 66	AH3	D	455	463	Right-handed alpha

There are 22 sheets in PDB entry 9DLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	31	34	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	361	364	anti-parallel
Strand 3	B	381	387	parallel
Strand 4	B	286	292	parallel
Strand 5	B	254	258	parallel
Strand 6	B	405	409	parallel
Strand 7	B	427	430	parallel
Strand 8	A	464	472	parallel
Strand 9	A	134	142	anti-parallel
Strand 10	A	119	123	anti-parallel
Strand 11	D	119	123	anti-parallel
Strand 12	D	134	142	anti-parallel
Strand 13	D	464	472	anti-parallel
Strand 14	C	427	430	parallel
Strand 15	C	405	409	parallel
Strand 16	C	254	258	parallel
Strand 17	C	286	292	parallel
Strand 18	C	381	387	parallel
Strand 19	C	361	364	parallel
Strand 20	C	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	172	176	parallel
Strand 3	A	145	149	parallel
Strand 4	A	224	228	parallel
Strand 5	A	246	249	parallel
Strand 6	A	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	381	387	parallel
Strand 4	A	286	292	parallel
Strand 5	A	254	258	parallel
Strand 6	A	405	409	parallel
Strand 7	A	427	430	parallel
Strand 8	B	464	472	parallel
Strand 9	B	134	142	anti-parallel
Strand 10	B	119	123	anti-parallel
Strand 11	C	119	122	anti-parallel
Strand 12	C	135	142	anti-parallel
Strand 13	C	464	471	anti-parallel
Strand 14	D	427	430	parallel
Strand 15	D	405	409	parallel
Strand 16	D	254	258	parallel
Strand 17	D	286	292	parallel
Strand 18	D	384	387	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	446	447	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	444	first strand
Strand 2	A	453	454	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	29	34	parallel
Strand 3	B	18	22	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	172	176	parallel
Strand 3	B	145	149	parallel
Strand 4	B	224	228	parallel
Strand 5	B	246	249	parallel
Strand 6	B	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	22	first strand
Strand 2	C	29	34	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	172	176	parallel
Strand 3	C	145	149	parallel
Strand 4	C	224	228	parallel
Strand 5	C	246	249	parallel
Strand 6	C	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	444	first strand
Strand 2	C	453	454	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	29	34	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	172	176	parallel
Strand 3	D	145	149	parallel
Strand 4	D	224	228	parallel
Strand 5	D	246	249	parallel
Strand 6	D	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	444	first strand
Strand 2	D	453	454	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLC