Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DLF entry

There are 3 chains in PDB entry 9DLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 29ASP 657
A
 ASP 0LYS 108
B
 GLU 1ALA 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 9DLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
31 55Right-handed alpha
Helix 2
AA2
C
62 75Right-handed alpha
Helix 3
AA3
C
94 106Right-handed alpha
Helix 4
AA4
C
111 139Right-handed alpha
Helix 5
AA5
C
140 143Right-handed 310
Helix 6
AA6
C
152 160Right-handed alpha
Helix 7
AA7
C
160 166Right-handed alpha
Helix 8
AA8
C
172 193Right-handed alpha
Helix 9
AA9
C
203 216Right-handed alpha
Helix 10
AB1
C
216 221Right-handed alpha
Helix 11
AB2
C
224 239Right-handed alpha
Helix 12
AB3
C
241 253Right-handed alpha
Helix 13
AB4
C
253 268Right-handed alpha
Helix 14
AB5
C
273 278Right-handed alpha
Helix 15
AB6
C
284 297Right-handed alpha
Helix 16
AB7
C
301 320Right-handed alpha
Helix 17
AB8
C
336 341Right-handed alpha
Helix 18
AB9
C
342 365Right-handed alpha
Helix 19
AC1
C
371 373Right-handed 310
Helix 20
AC2
C
374 382Right-handed alpha
Helix 21
AC3
C
383 385Right-handed 310
Helix 22
AC4
C
400 426Right-handed alpha
Helix 23
AC5
C
444 453Right-handed alpha
Helix 24
AC6
C
462 467Right-handed 310
Helix 25
AC7
C
470 479Right-handed alpha
Helix 26
AC8
C
526 534Right-handed alpha
Helix 27
AC9
C
549 553Right-handed 310
Helix 28
AD1
C
568 575Right-handed alpha
Helix 29
AD2
C
581 585Right-handed 310
Helix 30
AD3
C
590 601Right-handed alpha
Helix 31
AD4
C
603 613Right-handed alpha
Helix 32
AD5
C
618 628Right-handed alpha
Helix 33
AD6
C
628 634Right-handed alpha
Helix 34
AD7
C
640 649Right-handed alpha
Helix 35
AD8
A
79 83Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9DLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 151first strand
Strand 2
C
387 391anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
495 499first strand
Strand 2
C
484 488anti-parallel
Strand 3
C
519 522parallel
Strand 4
C
538 540parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
70 76anti-parallel
Strand 4
A
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
103 107parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
34 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
103 107parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
16 25anti-parallel
Strand 3
B
78 86anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
45 52anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
92 101anti-parallel
Strand 5
B
108 115anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
45 52anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
92 101anti-parallel
Strand 5
B
119 121anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il