Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9DLR entry

There are 4 chains in PDB entry 9DLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 575PHE 800
B
 ILE 4VAL 398
C
 ASP 17LYS 66
D
 LEU 10GLU 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9DLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
576 593Right-handed alpha
Helix 2
AA2
A
595 614Right-handed alpha
Helix 3
AA3
A
617 635Right-handed alpha
Helix 4
AA4
A
636 653Right-handed alpha
Helix 5
AA5
A
658 673Right-handed alpha
Helix 6
AA6
A
675 685Right-handed alpha
Helix 7
AA7
A
687 693Right-handed alpha
Helix 8
AA8
A
693 708Right-handed alpha
Helix 9
AA9
A
710 720Right-handed alpha
Helix 10
AB1
A
724 748Right-handed alpha
Helix 11
AB2
A
754 761Right-handed alpha
Helix 12
AB3
A
764 774Right-handed alpha
Helix 13
AB4
A
790 794Right-handed alpha
Helix 14
AB5
A
795 797Right-handed 310
Helix 15
AB6
B
5 20Right-handed alpha
Helix 16
AB7
B
21 30Right-handed alpha
Helix 17
AB8
B
33 37Right-handed 310
Helix 18
AB9
B
46 54Right-handed alpha
Helix 19
AC1
B
57 74Right-handed alpha
Helix 20
AC2
B
76 98Right-handed alpha
Helix 21
AC3
B
104 130Right-handed alpha
Helix 22
AC4
B
135 155Right-handed alpha
Helix 23
AC5
B
163 166Right-handed 310
Helix 24
AC6
B
167 182Right-handed alpha
Helix 25
AC7
B
185 187Right-handed 310
Helix 26
AC8
B
188 198Right-handed alpha
Helix 27
AC9
B
205 223Right-handed alpha
Helix 28
AD1
B
225 239Right-handed alpha
Helix 29
AD2
B
244 262Right-handed alpha
Helix 30
AD3
B
267 274Right-handed alpha
Helix 31
AD4
B
277 287Right-handed alpha
Helix 32
AD5
B
290 301Right-handed alpha
Helix 33
AD6
B
301 309Right-handed alpha
Helix 34
AD7
B
310 315Right-handed alpha
Helix 35
AD8
B
316 334Right-handed alpha
Helix 36
AD9
B
340 350Right-handed alpha
Helix 37
AE1
B
356 370Right-handed alpha
Helix 38
AE2
C
50 62Right-handed alpha
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There are 3 sheets in PDB entry 9DLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
787 789anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
C
39 40anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
383 386anti-parallel
Strand 3
B
375 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il