Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DLS entry

There are 7 chains in PDB entry 9DLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 22	ALA 461
B	LYS 22	GLY 462
C	LYS 22	PRO 463
D	VAL 23	PRO 463
E	LYS 22	PRO 463
F	LYS 22	PRO 463
G	T 1	A 22

There are130 helices in PDB entry 9DLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	41	Right-handed alpha
Helix 2	AA2	A	44	50	Right-handed alpha
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	59	75	Right-handed alpha
Helix 5	AA5	A	80	90	Right-handed alpha
Helix 6	AA6	A	93	98	Right-handed alpha
Helix 7	AA7	A	99	110	Right-handed alpha
Helix 8	AA8	A	115	143	Right-handed alpha
Helix 9	AA9	A	150	168	Right-handed alpha
Helix 10	AB1	A	178	195	Right-handed alpha
Helix 11	AB2	A	208	216	Right-handed alpha
Helix 12	AB3	A	233	249	Right-handed alpha
Helix 13	AB4	A	261	275	Right-handed alpha
Helix 14	AB5	A	277	284	Right-handed alpha
Helix 15	AB6	A	287	305	Right-handed alpha
Helix 16	AB7	A	316	332	Right-handed alpha
Helix 17	AB8	A	347	351	Right-handed 310
Helix 18	AB9	A	354	373	Right-handed alpha
Helix 19	AC1	A	383	389	Right-handed 310
Helix 20	AC2	A	395	399	Right-handed 310
Helix 21	AC3	A	401	409	Right-handed alpha
Helix 22	AC4	A	417	422	Right-handed alpha
Helix 23	AC5	B	27	41	Right-handed alpha
Helix 24	AC6	B	44	48	Right-handed 310
Helix 25	AC7	B	59	75	Right-handed alpha
Helix 26	AC8	B	80	92	Right-handed alpha
Helix 27	AC9	B	94	97	Right-handed 310
Helix 28	AD1	B	98	109	Right-handed alpha
Helix 29	AD2	B	115	145	Right-handed alpha
Helix 30	AD3	B	150	168	Right-handed alpha
Helix 31	AD4	B	179	196	Right-handed alpha
Helix 32	AD5	B	208	216	Right-handed alpha
Helix 33	AD6	B	233	249	Right-handed alpha
Helix 34	AD7	B	261	275	Right-handed alpha
Helix 35	AD8	B	277	284	Right-handed alpha
Helix 36	AD9	B	287	305	Right-handed alpha
Helix 37	AE1	B	316	332	Right-handed alpha
Helix 38	AE2	B	341	345	Right-handed 310
Helix 39	AE3	B	347	351	Right-handed 310
Helix 40	AE4	B	353	373	Right-handed alpha
Helix 41	AE5	B	384	389	Right-handed alpha
Helix 42	AE6	B	395	399	Right-handed 310
Helix 43	AE7	B	402	409	Right-handed alpha
Helix 44	AE8	B	418	422	Right-handed alpha
Helix 45	AE9	C	27	41	Right-handed alpha
Helix 46	AF1	C	45	50	Right-handed alpha
Helix 47	AF2	C	53	57	Right-handed 310
Helix 48	AF3	C	59	75	Right-handed alpha
Helix 49	AF4	C	80	90	Right-handed alpha
Helix 50	AF5	C	99	110	Right-handed alpha
Helix 51	AF6	C	115	145	Right-handed alpha
Helix 52	AF7	C	150	168	Right-handed alpha
Helix 53	AF8	C	179	196	Right-handed alpha
Helix 54	AF9	C	208	216	Right-handed alpha
Helix 55	AG1	C	233	249	Right-handed alpha
Helix 56	AG2	C	261	275	Right-handed alpha
Helix 57	AG3	C	277	284	Right-handed alpha
Helix 58	AG4	C	287	305	Right-handed alpha
Helix 59	AG5	C	316	332	Right-handed alpha
Helix 60	AG6	C	341	345	Right-handed 310
Helix 61	AG7	C	353	373	Right-handed alpha
Helix 62	AG8	C	384	389	Right-handed 310
Helix 63	AG9	C	395	399	Right-handed 310
Helix 64	AH1	C	402	408	Right-handed alpha
Helix 65	AH2	C	452	455	Right-handed 310
Helix 66	AH3	D	27	41	Right-handed alpha
Helix 67	AH4	D	44	49	Right-handed alpha
Helix 68	AH5	D	59	75	Right-handed alpha
Helix 69	AH6	D	80	91	Right-handed alpha
Helix 70	AH7	D	93	98	Right-handed alpha
Helix 71	AH8	D	99	109	Right-handed alpha
Helix 72	AH9	D	115	145	Right-handed alpha
Helix 73	AI1	D	150	169	Right-handed alpha
Helix 74	AI2	D	179	196	Right-handed alpha
Helix 75	AI3	D	208	216	Right-handed alpha
Helix 76	AI4	D	233	249	Right-handed alpha
Helix 77	AI5	D	261	275	Right-handed alpha
Helix 78	AI6	D	277	284	Right-handed alpha
Helix 79	AI7	D	287	305	Right-handed alpha
Helix 80	AI8	D	316	332	Right-handed alpha
Helix 81	AI9	D	341	345	Right-handed 310
Helix 82	AJ1	D	347	351	Right-handed 310
Helix 83	AJ2	D	353	373	Right-handed alpha
Helix 84	AJ3	D	383	389	Right-handed 310
Helix 85	AJ4	D	395	399	Right-handed 310
Helix 86	AJ5	D	402	408	Right-handed alpha
Helix 87	AJ6	D	417	421	Right-handed 310
Helix 88	AJ7	D	452	455	Right-handed 310
Helix 89	AJ8	E	27	41	Right-handed alpha
Helix 90	AJ9	E	44	49	Right-handed alpha
Helix 91	AK1	E	59	75	Right-handed alpha
Helix 92	AK2	E	80	90	Right-handed alpha
Helix 93	AK3	E	98	110	Right-handed alpha
Helix 94	AK4	E	116	145	Right-handed alpha
Helix 95	AK5	E	150	169	Right-handed alpha
Helix 96	AK6	E	178	196	Right-handed alpha
Helix 97	AK7	E	208	216	Right-handed alpha
Helix 98	AK8	E	233	249	Right-handed alpha
Helix 99	AK9	E	261	275	Right-handed alpha
Helix 100	AL1	E	277	284	Right-handed alpha
Helix 101	AL2	E	287	305	Right-handed alpha
Helix 102	AL3	E	316	332	Right-handed alpha
Helix 103	AL4	E	347	351	Right-handed 310
Helix 104	AL5	E	353	373	Right-handed alpha
Helix 105	AL6	E	383	389	Right-handed 310
Helix 106	AL7	E	395	399	Right-handed 310
Helix 107	AL8	E	402	409	Right-handed alpha
Helix 108	AL9	E	417	421	Right-handed 310
Helix 109	AM1	F	27	41	Right-handed alpha
Helix 110	AM2	F	44	50	Right-handed alpha
Helix 111	AM3	F	59	76	Right-handed alpha
Helix 112	AM4	F	80	91	Right-handed alpha
Helix 113	AM5	F	99	109	Right-handed alpha
Helix 114	AM6	F	115	142	Right-handed alpha
Helix 115	AM7	F	150	168	Right-handed alpha
Helix 116	AM8	F	179	193	Right-handed alpha
Helix 117	AM9	F	208	216	Right-handed alpha
Helix 118	AN1	F	233	249	Right-handed alpha
Helix 119	AN2	F	261	275	Right-handed alpha
Helix 120	AN3	F	277	284	Right-handed alpha
Helix 121	AN4	F	287	305	Right-handed alpha
Helix 122	AN5	F	316	332	Right-handed alpha
Helix 123	AN6	F	341	345	Right-handed 310
Helix 124	AN7	F	347	351	Right-handed 310
Helix 125	AN8	F	354	373	Right-handed alpha
Helix 126	AN9	F	383	389	Right-handed 310
Helix 127	AO1	F	395	399	Right-handed 310
Helix 128	AO2	F	402	408	Right-handed alpha
Helix 129	AO3	F	417	422	Right-handed alpha
Helix 130	AO4	F	452	455	Right-handed 310

There are 6 sheets in PDB entry 9DLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	458	first strand
Strand 2	A	444	451	anti-parallel
Strand 3	A	431	438	anti-parallel
Strand 4	A	411	416	anti-parallel
Strand 5	A	223	227	parallel
Strand 6	A	376	380	parallel
Strand 7	A	336	340	parallel
Strand 8	A	253	257	parallel
Strand 9	A	307	310	parallel
Strand 10	F	177	178	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	C	307	310	anti-parallel
Strand 3	C	253	257	parallel
Strand 4	C	336	340	parallel
Strand 5	C	376	380	parallel
Strand 6	C	223	227	parallel
Strand 7	C	411	416	parallel
Strand 8	C	431	438	anti-parallel
Strand 9	C	445	451	anti-parallel
Strand 10	C	456	459	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	253	257	parallel
Strand 3	B	336	340	parallel
Strand 4	B	376	380	parallel
Strand 5	B	223	227	parallel
Strand 6	B	411	417	parallel
Strand 7	B	430	438	anti-parallel
Strand 8	B	444	451	anti-parallel
Strand 9	B	456	459	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	D	307	310	anti-parallel
Strand 3	D	253	257	parallel
Strand 4	D	336	340	parallel
Strand 5	D	376	380	parallel
Strand 6	D	223	227	parallel
Strand 7	D	411	416	parallel
Strand 8	D	431	438	anti-parallel
Strand 9	D	444	451	anti-parallel
Strand 10	D	456	459	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	E	307	310	anti-parallel
Strand 3	E	253	257	parallel
Strand 4	E	336	340	parallel
Strand 5	E	376	378	parallel
Strand 6	E	223	227	parallel
Strand 7	E	411	416	parallel
Strand 8	E	431	438	anti-parallel
Strand 9	E	445	451	anti-parallel
Strand 10	E	456	458	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	310	first strand
Strand 2	F	253	257	parallel
Strand 3	F	336	340	parallel
Strand 4	F	376	380	parallel
Strand 5	F	223	227	parallel
Strand 6	F	411	416	parallel
Strand 7	F	431	438	anti-parallel
Strand 8	F	444	451	anti-parallel
Strand 9	F	456	458	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLS