Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9DLX entry

There are 9 chains in PDB entry 9DLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	PHE 414
B	MET 1	GLY 390
C	MET 1	MET 370
D	MET 1	GLU 285
E	PRO 2	PRO 176
F	THR 2	PHE 168
G	ASN 22	VAL 151
H	SER 461	ASP 501
I	SER 461	ASP 501

There are 73 helices in PDB entry 9DLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	66	Right-handed 310
Helix 2	AA2	A	85	99	Right-handed alpha
Helix 3	AA3	A	119	134	Right-handed alpha
Helix 4	AA4	A	143	152	Right-handed alpha
Helix 5	AA5	A	153	155	Right-handed 310
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	196	212	Right-handed alpha
Helix 8	AA8	A	219	232	Right-handed alpha
Helix 9	AA9	A	237	248	Right-handed alpha
Helix 10	AB1	A	248	253	Right-handed alpha
Helix 11	AB2	A	273	278	Right-handed alpha
Helix 12	AB3	A	279	282	Right-handed 310
Helix 13	AB4	A	284	288	Right-handed 310
Helix 14	AB5	A	295	306	Right-handed alpha
Helix 15	AB6	A	308	310	Right-handed 310
Helix 16	AB7	A	311	318	Right-handed alpha
Helix 17	AB8	A	323	327	Right-handed 310
Helix 18	AB9	A	331	355	Right-handed alpha
Helix 19	AC1	A	375	386	Right-handed alpha
Helix 20	AC2	A	387	393	Right-handed 310
Helix 21	AC3	A	397	403	Right-handed alpha
Helix 22	AC4	B	81	93	Right-handed alpha
Helix 23	AC5	B	101	103	Right-handed 310
Helix 24	AC6	B	116	130	Right-handed alpha
Helix 25	AC7	B	141	150	Right-handed alpha
Helix 26	AC8	B	185	201	Right-handed alpha
Helix 27	AC9	B	209	221	Right-handed alpha
Helix 28	AD1	B	229	237	Right-handed alpha
Helix 29	AD2	B	262	267	Right-handed alpha
Helix 30	AD3	B	268	272	Right-handed 310
Helix 31	AD4	B	277	288	Right-handed alpha
Helix 32	AD5	B	290	292	Right-handed 310
Helix 33	AD6	B	293	300	Right-handed alpha
Helix 34	AD7	B	305	309	Right-handed 310
Helix 35	AD8	B	312	329	Right-handed alpha
Helix 36	AD9	B	334	340	Right-handed alpha
Helix 37	AE1	B	349	351	Right-handed 310
Helix 38	AE2	B	352	365	Right-handed alpha
Helix 39	AE3	B	374	380	Right-handed alpha
Helix 40	AE4	B	381	389	Right-handed 310
Helix 41	AE5	C	357	364	Right-handed alpha
Helix 42	AE6	D	8	25	Right-handed alpha
Helix 43	AE7	D	38	40	Right-handed 310
Helix 44	AE8	D	47	51	Right-handed 310
Helix 45	AE9	D	63	70	Right-handed alpha
Helix 46	AF1	D	71	80	Right-handed alpha
Helix 47	AF2	D	81	84	Right-handed 310
Helix 48	AF3	D	107	114	Right-handed alpha
Helix 49	AF4	D	115	121	Right-handed alpha
Helix 50	AF5	D	122	135	Right-handed alpha
Helix 51	AF6	D	171	187	Right-handed alpha
Helix 52	AF7	D	236	245	Right-handed alpha
Helix 53	AF8	D	246	279	Right-handed alpha
Helix 54	AF9	E	40	53	Right-handed alpha
Helix 55	AG1	E	63	83	Right-handed alpha
Helix 56	AG2	E	87	100	Right-handed alpha
Helix 57	AG3	E	122	149	Right-handed alpha
Helix 58	AG4	E	167	171	Right-handed 310
Helix 59	AG5	F	4	20	Right-handed alpha
Helix 60	AG6	F	36	41	Right-handed alpha
Helix 61	AG7	F	43	47	Right-handed 310
Helix 62	AG8	F	80	97	Right-handed alpha
Helix 63	AG9	F	120	126	Right-handed alpha
Helix 64	AH1	F	127	167	Right-handed alpha
Helix 65	AH2	G	50	60	Right-handed alpha
Helix 66	AH3	G	68	85	Right-handed alpha
Helix 67	AH4	G	90	96	Right-handed alpha
Helix 68	AH5	G	99	114	Right-handed alpha
Helix 69	AH6	G	120	134	Right-handed alpha
Helix 70	AH7	G	138	146	Right-handed alpha
Helix 71	AH8	H	465	479	Right-handed alpha
Helix 72	AH9	H	480	485	Right-handed 310
Helix 73	AI1	I	462	482	Right-handed alpha

There are 22 sheets in PDB entry 9DLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	110	113	parallel
Strand 5	A	138	142	parallel
Strand 6	A	395	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	72	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	191	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	319	322	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	7	13	anti-parallel
Strand 4	B	105	111	parallel
Strand 5	B	135	140	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	180	182	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	164	170	anti-parallel
Strand 3	B	154	158	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	32	38	anti-parallel
Strand 4	C	41	48	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	67	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	104	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	194	198	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	212	first strand
Strand 2	C	218	223	anti-parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	238	243	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	270	274	anti-parallel
Strand 4	C	280	285	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	332	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	352	356	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	152	156	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	202	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	65	anti-parallel
Strand 3	F	69	75	anti-parallel
Strand 4	F	114	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9DLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9DLX